Recent advances in proteomics and metabolomics in plants.

IF 10.6 Q1 HORTICULTURE Molecular Horticulture Pub Date : 2022-07-23 DOI:10.1186/s43897-022-00038-9
Shijuan Yan, Ruchika Bhawal, Zhibin Yin, Theodore W Thannhauser, Sheng Zhang
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Abstract

Over the past decade, systems biology and plant-omics have increasingly become the main stream in plant biology research. New developments in mass spectrometry and bioinformatics tools, and methodological schema to integrate multi-omics data have leveraged recent advances in proteomics and metabolomics. These progresses are driving a rapid evolution in the field of plant research, greatly facilitating our understanding of the mechanistic aspects of plant metabolisms and the interactions of plants with their external environment. Here, we review the recent progresses in MS-based proteomics and metabolomics tools and workflows with a special focus on their applications to plant biology research using several case studies related to mechanistic understanding of stress response, gene/protein function characterization, metabolic and signaling pathways exploration, and natural product discovery. We also present a projection concerning future perspectives in MS-based proteomics and metabolomics development including their applications to and challenges for system biology. This review is intended to provide readers with an overview of how advanced MS technology, and integrated application of proteomics and metabolomics can be used to advance plant system biology research.

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植物蛋白质组学和代谢组学的最新进展。
在过去的十年里,系统生物学和植物组学越来越成为植物生物学研究的主流。质谱和生物信息学工具的新发展,以及整合多组学数据的方法体系,利用了蛋白质组学和代谢组学的最新进展。这些进展推动了植物研究领域的快速发展,极大地促进了我们对植物代谢的机制方面以及植物与其外部环境的相互作用的理解。在这里,我们回顾了基于MS的蛋白质组学和代谢组学工具和工作流程的最新进展,特别关注它们在植物生物学研究中的应用,使用了几个与应激反应的机制理解、基因/蛋白质功能表征、代谢和信号通路探索以及天然产物发现有关的案例研究。我们还对基于MS的蛋白质组学和代谢组学发展的未来前景进行了预测,包括它们在系统生物学中的应用和挑战。这篇综述旨在为读者概述先进的MS技术以及蛋白质组学和代谢组学的综合应用如何用于推进植物系统生物学研究。
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来源期刊
Molecular Horticulture
Molecular Horticulture horticultural research-
CiteScore
8.00
自引率
0.00%
发文量
24
审稿时长
12 weeks
期刊介绍: Aims Molecular Horticulture aims to publish research and review articles that significantly advance our knowledge in understanding how the horticultural crops or their parts operate mechanistically. Articles should have profound impacts not only in terms of high citation number or the like, but more importantly on the direction of the horticultural research field. Scope Molecular Horticulture publishes original Research Articles, Letters, and Reviews on novel discoveries on the following, but not limited to, aspects of horticultural plants (including medicinal plants): ▪ Developmental and evolutionary biology ▪ Physiology, biochemistry and cell biology ▪ Plant-microbe and plant-environment interactions ▪ Genetics and epigenetics ▪ Molecular breeding and biotechnology ▪ Secondary metabolism and synthetic biology ▪ Multi-omics dealing with data sets of genome, transcriptome, proteome, metabolome, epigenome and/or microbiome. The journal also welcomes research articles using model plants that reveal mechanisms and/or principles readily applicable to horticultural plants, translational research articles involving application of basic knowledge (including those of model plants) to the horticultural crops, novel Methods and Resources of broad interest. In addition, the journal publishes Editorial, News and View, and Commentary and Perspective on current, significant events and topics in global horticultural fields with international interests.
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