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Horizontal transfer of plasmid-like extrachromosomal circular DNAs across graft junctions in Solanaceae. 茄科植物中类似质粒的染色体外环状 DNA 跨嫁接接头的水平转移。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-11-20 DOI: 10.1186/s43897-024-00124-0
Aijun Zhang, Tingjin Wang, Lu Yuan, Yuxin Shen, Ke Liu, Bin Liu, Kexin Xu, Mohamed A Elsadek, Yiting Wang, Liang Wu, Zhenyu Qi, Jingquan Yu, Mingfang Zhang, Liping Chen

The transfer of genetic material between stocks and scions of grafted plants has been extensively studied; however, the nature and frequency of the transferred material remain elusive. Here, we report a grafting system involving woody goji as the stock and herbaceous tomato as the scion, which was developed using in vitro and in vivo approaches; the results confirmed horizontal transfer of multiple nuclear DNA fragments from donor goji cells to recipient tomato cells. Tomato tissues containing goji donor DNA fragments at or near the grafting junctions had a perennial-biased anatomical structure, from which roots or shoots were regenerated. Most of the fragments were plasmid-like extrachromosomal circular DNAs (eccDNAs) present in the regenerants derived from the cells and in their asexual offspring. Plants with transferred eccDNAs in regenerated roots or shoots (designated "Go-tomato") were grown perennially and showed excellent agronomic performance. The present study provides new insights into the replication, expression, and potential function of eccDNAs in the pleiotropic traits of Go-tomato. Mobile eccDNAs offer evidence of stock-to-scion horizontal DNA transfer beyond chromosomes and organelles, thereby contributing to the molecular understanding of graft-induced genetic variation, evolution, and breeding.

人们已经对嫁接植物的种皮和接穗之间的遗传物质转移进行了广泛的研究;然而,转移物质的性质和频率仍然难以确定。在此,我们报告了一个以木本枸杞为种皮、草本番茄为接穗的嫁接系统,该系统是通过体外和体内方法开发的;结果证实了多个核 DNA 片段从供体枸杞细胞水平转移到受体番茄细胞。在嫁接交界处或附近含有枸杞供体DNA片段的番茄组织具有多年生偏向的解剖结构,并从中再生出根或芽。大部分片段是质粒样染色体外环状DNA(cccDNA),存在于细胞再生体及其无性后代中。再生根或芽中含有转入的ccDNAs的植株(命名为 "Go-tomato")可常年生长,并表现出优异的农艺性状。本研究为cccDNAs在番茄多效性状中的复制、表达和潜在功能提供了新的见解。可移动的cccDNA为染色体和细胞器以外的种群间DNA水平转移提供了证据,从而有助于从分子角度理解嫁接诱导的遗传变异、进化和育种。
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引用次数: 0
Transcription factor PbrERF114 is involved in the regulation of ethylene synthesis during pear fruit ripening. 转录因子 PbrERF114 参与了梨果成熟过程中乙烯合成的调控。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-11-15 DOI: 10.1186/s43897-024-00114-2
Guoming Wang, Zhihua Guo, Tengjiao Wang, Xueping Wang, Kaijie Qi, Jiping Xuan, Chao Gu, Shaoling Zhang

The plant hormone ethylene is indispensable to the ripening of climacteric fruits. Although extensive studies have been conducted on ethylene signaling, the ethylene response factor (ERF)-mediated transcriptional regulation of ethylene biosynthesis in pear fruits remains to be fully elucidated. We here constructed, sequenced, and analyzed transcriptome libraries in ethephon-treated and 1-MCP-treated Cuiguan pear fruits. In total, 721 fruit ripening-associated differentially expressed genes were identified. Among them, two key genes exhibited positive correlations: the 1-aminocyclopropane-1-carboxylic acid synthase (ACS)-encoding gene PbrACS3 and the ERF-encoding gene named PbrERF114. PbrERF114 overexpression increased ethylene production as well as the PbrACS3 expression level. Conversely, virus-induced gene silencing downregulated PbrERF114, thereby decreasing ethylene production and reducing PbrACS3 expression levels. Notably, PbrERF114 could directly interact with PbrACS3 and PbrERF24 promoters, thus inducing their expression. However, it did not result in an enhancement in luciferase activity, which is regulated by the PbrACS1b or PbrACO1 promoter. PbrERF24 could directly bind to PbrACO1 as well as PbrACS3 to promote ethylene synthesis. In conclusion, PbrERF114 can directly and indirectly mediate ethylene biosynthesis by transcriptionally regulating PbrACS3 and PbrERF24, respectively, thereby triggering a signaling cascade that induces the expression of both PbrACS3 and PbrACO1.

植物激素乙烯是攀缘果实成熟不可或缺的物质。尽管对乙烯信号转导进行了广泛的研究,但乙烯响应因子(ERF)介导的梨果乙烯生物合成转录调控仍有待全面阐明。在此,我们构建了乙烯利处理和 1-MCP 处理的翠冠梨果实的转录组文库,并对其进行了测序和分析。共鉴定出 721 个与果实成熟相关的差异表达基因。其中,两个关键基因表现出正相关性:1-氨基环丙烷-1-羧酸合成酶(ACS)编码基因 PbrACS3 和 ERF 编码基因 PbrERF114。PbrERF114 的过表达提高了乙烯的产量以及 PbrACS3 的表达水平。相反,病毒诱导的基因沉默会下调 PbrERF114,从而减少乙烯的产生并降低 PbrACS3 的表达水平。值得注意的是,PbrERF114 可直接与 PbrACS3 和 PbrERF24 启动子相互作用,从而诱导它们的表达。然而,它并没有导致荧光素酶活性的增强,而荧光素酶活性是由 PbrACS1b 或 PbrACO1 启动子调控的。PbrERF24 可直接与 PbrACO1 以及 PbrACS3 结合,促进乙烯的合成。总之,PbrERF114可分别通过转录调控PbrACS3和PbrERF24直接和间接介导乙烯的生物合成,从而触发诱导PbrACS3和PbrACO1表达的信号级联。
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引用次数: 0
Begomoviruses associated with okra yellow vein mosaic disease (OYVMD): diversity, transmission mechanism, and management strategies. 与黄秋葵黄脉花叶病(OYVMD)相关的蚕豆病毒:多样性、传播机制和管理策略。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-11-05 DOI: 10.1186/s43897-024-00112-4
Thomas Wilbur Davis, Andrew Nasa Thompson

Okra yellow vein mosaic disease (OYVMD) is a major constraint to okra production globally. It is caused by several distinct begomoviruses, including okra yellow vein mosaic virus (OYVMV), that are transmitted by the whitefly. This study synthesizes current knowledge on the complex interactions between whiteflies, begomoviruses, and okra plants that enable viral spread and cause OYVMD. The acquisition and transmission cycle involves specific processes including virion ingestion during phloem-feeding, endocytosis and passage across insect tissues, secretion in saliva, and inoculation into plants. Molecular compatibilities between vector coat proteins, midgut proteins, and plant factors modulate virus replication and movement through barrier tissues. Abiotic stresses and host traits also impact whitefly behavior and virus epidemiology. Begomoviruses such as OYVMV have spread globally wherever whitefly vectors and susceptible okra varieties occur. Integrated management of the tripartite pathosystem that incorporates host resistance, cultural tactics, and biological control is required to mitigate the transmission of begomoviruses and OYVMD impact. Finally, resolving vector-virus interactions and developing interference strategies will help contribute to strengthening okra germplasm resistance which can support sustainable food production.

黄秋葵黄脉花叶病(OYVMD)是全球黄秋葵生产的主要制约因素。它是由几种不同的乞巧病毒引起的,包括黄秋葵黄脉花叶病毒(OYVMV),由粉虱传播。本研究综述了目前关于粉虱、乞蛾病毒和黄秋葵植物之间复杂的相互作用的知识,这些相互作用促成了病毒的传播并引发了 OYVMD。病毒的获取和传播周期涉及特定过程,包括在韧皮部取食过程中摄取病毒、内吞和穿过昆虫组织、分泌唾液以及接种到植物中。载体衣壳蛋白、中肠蛋白和植物因子之间的分子兼容性调节病毒的复制和在屏障组织中的移动。非生物胁迫和寄主特性也会影响粉虱的行为和病毒的流行。只要有粉虱媒介和易感黄秋葵品种出现,OYVMV 等乞蛾病毒就会在全球范围内传播。需要对三方病理系统进行综合管理,将寄主抗性、文化策略和生物防治结合起来,以减轻乞猴病毒的传播和 OYVMD 的影响。最后,解决病媒与病毒之间的相互作用并制定干扰策略将有助于增强秋葵种质的抗性,从而支持可持续的粮食生产。
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引用次数: 0
VvD14c-VvMAX2-VvLOB/VvLBD19 module is involved in the strigolactone-mediated regulation of grapevine root architecture. VvD14c-VvMAX2-VvLOB/VvLBD19模块参与了绞股蓝内酯介导的葡萄根系结构调控。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-10-25 DOI: 10.1186/s43897-024-00117-z
Yan Xu, Zhengxin Lv, Muhammad Aamir Manzoor, Linhong Song, Maosen Wang, Lei Wang, Shiping Wang, Caixi Zhang, Songtao Jiu

The D14 protein, an alpha/beta hydrolase, is a key receptor in the strigolactone (SL) signaling pathway. However, the response of VvD14 to SL signals and its role in grapevine root architecture formation remain unclear. This study demonstrated that VvD14c was highly expressed in grapevine tissues and fruit stages than other VvD14 isoforms. Application of GR24, an SL analog, enhanced the elongation and diameter of adventitious roots but inhibited the elongation and density of lateral roots (LRs) and increased VvD14c expression. Additionally, GR24 is nested within the VvD14c pocket and strongly bound to the VvD14c protein, with an affinity of 5.65 × 10-9 M. Furthermore, VvD14c interacted with grapevine MORE AXILLARY GROWTH 2 (VvMAX2) in a GR24-dependent manner. Overexpression of VvD14c in the d14 mutant and VvMAX2 in the max2 Arabidopsis mutant reversed the increased LR number and density, as well as primary root elongation. Conversely, homologous overexpression of VvD14c and VvMAX2 resulted in reduced LR number and density in grapevines. VvMAX2 directly interacted with LATERAL ORGAN BOUNDARY (VvLOB) and VvLBD19, thereby positively regulating LR density. These findings highlight the role of SLs in regulating grapevine root architecture, potentially via the VvD14c-VvMAX2-VvLOB/VvLBD19 module, providing new insights into the regulation of root growth and development in grapevines.

D14蛋白是一种α/β水解酶,是绞股蓝内酯(SL)信号通路中的一个关键受体。然而,VvD14对SL信号的反应及其在葡萄根系结构形成中的作用仍不清楚。本研究表明,与其他 VvD14 同工型相比,VvD14c 在葡萄组织和果实阶段的表达量较高。施用 SL 类似物 GR24 可增强不定根的伸长和直径,但会抑制侧根(LRs)的伸长和密度,并增加 VvD14c 的表达。此外,GR24 嵌套在 VvD14c 口袋中,与 VvD14c 蛋白结合力很强,亲和力为 5.65 × 10-9 M。此外,VvD14c 与葡萄 MORE AXILLARY GROWTH 2(VvMAX2)以一种依赖 GR24 的方式相互作用。在拟南芥 d14 突变体中过表达 VvD14c 和在 max2 突变体中过表达 VvMAX2 可逆转 LR 数量和密度的增加以及主根的伸长。相反,同源过表达 VvD14c 和 VvMAX2 会导致葡萄树的 LR 数量和密度减少。VvMAX2 直接与 LATERAL ORGAN BOUNDARY (VvLOB) 和 VvLBD19 相互作用,从而对 LR 密度起到正向调节作用。这些发现强调了SLs在调节葡萄根系结构中的作用,可能是通过VvD14c-VvMAX2-VvLOB/VvLBD19模块,为葡萄根系生长和发育的调节提供了新的见解。
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引用次数: 0
Ovule initiation in crops characterized by multi-ovulate ovaries. 以多卵巢为特征的作物的胚珠萌发。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-10-18 DOI: 10.1186/s43897-024-00116-0
Yuan-Xin Wang, Xian-Chen Geng, Lu-Han Yang, Ze-Yu Xiong, Yu-Tong Jiang, Jian Pan, Wen-Hui Lin
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引用次数: 0
CyDotian: a versatile toolkit for identification of intragenic repeat sequences. CyDotian:用于识别基因内重复序列的多功能工具包。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-10-09 DOI: 10.1186/s43897-024-00113-3
Huilong Chen, Gang Xu, Weina Ge, Shuyan Feng, Yanli Lin, Changqing Guo, Qianyi Jing, Xuekai Wang, Luiz Gustavo Nussio, Xiyin Wang, Fuyu Yang
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引用次数: 0
Functions of membrane proteins in regulating fruit ripening and stress responses of horticultural crops. 膜蛋白在调节园艺作物果实成熟和应激反应中的功能。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-09-24 DOI: 10.1186/s43897-024-00111-5
Daoguo Chen, Yuhan Liu, Yong Chen, Boqiang Li, Tong Chen, Shiping Tian

Fruit ripening is accompanied by the development of fruit quality traits; however, this process also increases the fruit's susceptibility to various environmental stresses, including pathogen attacks and other stress factors. Therefore, modulating the fruit ripening process and defense responses is crucial for maintaining fruit quality and extending shelf life. Membrane proteins play intricate roles in mediating signal transduction, ion transport, and many other important biological processes, thus attracting extensive research interest. This review mainly focuses on the functions of membrane proteins in regulating fruit ripening and defense responses against biotic and abiotic factors, addresses their potential as targets for improving fruit quality and resistance to environmental challenges, and further highlights some open questions to be addressed.

果实成熟伴随着果实品质特征的发展,但这一过程也增加了果实对各种环境胁迫的易感性,包括病原体侵袭和其他胁迫因素。因此,调节果实成熟过程和防御反应对于保持果实品质和延长货架期至关重要。膜蛋白在介导信号转导、离子转运和许多其他重要的生物过程中发挥着复杂的作用,因此引起了广泛的研究兴趣。本综述主要关注膜蛋白在调控果实成熟以及对生物和非生物因素的防御反应中的功能,探讨膜蛋白作为改善果实品质和抵抗环境挑战的靶标的潜力,并进一步强调一些有待解决的开放性问题。
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引用次数: 0
Loss-of-function mutation in anthocyanidin reductase activates the anthocyanin synthesis pathway in strawberry. 花青素还原酶功能缺失突变激活草莓花青素合成途径
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-09-14 DOI: 10.1186/s43897-024-00106-2
Pengbo Xu, Maobai Li, Chao Ma, Xinyu Li, Peng Bai, Anqi Lin, Chong Wang, Liqing Zhang, Huiyun Kuang, Hongli Lian

Fruit color substantially affects consumer preferences, with darker red strawberries being economically more valuable due to their higher anthocyanin content. However, the molecular basis for the dark red coloration remains unclear. Through screening of an ethyl methanesulfonate mutant library, we identified a rg418 mutant, that demonstrated anthocyanin accumulation during early fruit development stages. Furthermore, the ripening fruits of this mutant had higher anthocyanin content than wild-type (WT) fruits. An analysis of flavonoid content in WT and rg418 mutant fruits revealed substantial changes in metabolic fluxes, with the mutant exhibiting increased levels of anthocyanins and flavonols and decreased levels of proanthocyanidins. Bulked sergeant analysis sequencing indicated that the mutant gene was anthocyanidin reductase (ANR), a key gene in the proanthocyanidin synthesis pathway. Furthermore, transcriptome sequencing revealed the increased expression of MYB105 during the early development stage of mutant fruits, which promoted the expression of UFGT (UDP-glucose flavonoid 3-O-glucosyltransferase), a key gene involved in anthocyanin synthesis, thus substantially enhancing the anthocyanin content in the mutant fruits. Additionally, mutating ANR in a white-fruited strawberry variant (myb10 mutant) resulted in appealing pink-colored fruits, suggesting the diverse roles of ANR in fruit color regulation. Our study provides valuable theoretical insights for improving strawberry fruit color.

水果的颜色对消费者的喜好有很大影响,深红色草莓由于花青素含量较高,经济价值更高。然而,深红色的分子基础仍不清楚。通过筛选甲磺酸乙酯突变体文库,我们发现了一个 rg418 突变体,该突变体在果实早期发育阶段表现出花青素积累。此外,该突变体成熟果实的花青素含量高于野生型果实。对WT和rg418突变体果实中类黄酮含量的分析表明,代谢通量发生了很大变化,突变体的花青素和黄酮醇含量增加,原花青素含量减少。大块军士分析测序表明,突变基因是花青素还原酶(ANR),它是原花青素合成途径中的一个关键基因。此外,转录组测序发现,在突变体果实的早期发育阶段,MYB105的表达量增加,促进了参与花青素合成的关键基因UFGT(UDP-葡萄糖类黄酮3-O-葡萄糖基转移酶)的表达,从而大幅提高了突变体果实中的花青素含量。此外,在白果草莓变体(myb10突变体)中突变ANR,可获得诱人的粉红色果实,这表明ANR在果实颜色调节中发挥着多种作用。我们的研究为改善草莓果实颜色提供了宝贵的理论依据。
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引用次数: 0
Molecular and biochemical components associated with chilling tolerance in tomato: comparison of different developmental stages. 与番茄耐寒性相关的分子和生化成分:不同发育阶段的比较。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-09-05 DOI: 10.1186/s43897-024-00108-0
Maria Dolores Camalle, Elena Levin, Sivan David, Adi Faigenboim, Majid R Foolad, Amnon Lers

The cultivated tomato, Solanum lycopersicum, is highly sensitive to cold stress (CS), resulting in significant losses during cultivation and postharvest fruit storage. Previously, we demonstrated the presence of substantial genetic variation in fruit chilling tolerance in a tomato recombinant inbred line (RIL) population derived from a cross between a chilling-sensitive tomato line and a chilling-tolerant accession of the wild species S. pimpinellifolium. Here, we investigated molecular and biochemical components associated with chilling tolerance in fruit and leaves, using contrasting groups of "chilling tolerant" and "chilling sensitive" RI lines. Transcriptomic analyses were conducted on fruit exposed to CS, and gene expressions and biochemical components were measured in fruit and leaves. The analyses revealed core responding genes specific to either the cold-tolerant or cold-sensitive RI lines, which were differentially regulated in similar fashion in both leaves and fruit within each group. These genes may be used as markers to determine tomato germplasm cold tolerance or sensitivity. This study demonstrated that tomato response to CS in different developmental stages, including seedling and postharvest fruit, might be mediated by common biological/genetic factors. Therefore, genetic selection for cold tolerance during early stages of plant development may lead to lines with greater postharvest fruit chilling tolerance.

栽培番茄(Solanum lycopersicum)对冷胁迫(CS)高度敏感,导致其在栽培和采后果实贮藏期间损失惨重。在此之前,我们证明了番茄重组近交系(RIL)群体在果实耐寒性方面存在巨大的遗传变异,该群体由对寒冷敏感的番茄品系和耐寒的野生种 S. pimpinellifolium 杂交而来。在这里,我们利用 "耐寒 "和 "对寒冷敏感 "的 RI 株系,研究了与果实和叶片耐寒性相关的分子和生化成分。对暴露于 CS 的果实进行了转录组分析,并测定了果实和叶片中的基因表达和生化成分。分析发现了耐寒或对寒冷敏感的 RI 品系特有的核心反应基因,这些基因在每组中的叶片和果实中都受到类似的不同调控。这些基因可用作确定番茄种质耐寒性或敏感性的标记。这项研究表明,番茄在不同发育阶段(包括幼苗和采后果实)对 CS 的反应可能是由共同的生物/遗传因素介导的。因此,在植物发育早期对耐寒性进行遗传选择,可能会培育出采后果实耐寒性更强的品系。
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引用次数: 0
6-Methyl-5-hepten-2-one promotes programmed cell death during superficial scald development in pear. 6-甲基-5-庚烯-2-酮能促进梨表皮烫伤过程中的程序性细胞死亡。
IF 10.6 Q1 HORTICULTURE Pub Date : 2024-08-27 DOI: 10.1186/s43897-024-00107-1
Junpeng Niu, Mingzhen Xu, Xu Zhang, Luqi Li, Weiqi Luo, Meng Ma, Lin Zhu, Decai Tian, Shaoling Zhang, Bing Xie, Guodong Wang, Libin Wang, Wei Hui

Plants possess the ability to induce programmed cell death (PCD) in response to abiotic and biotic stresses; nevertheless, the evidence on PCD initiation during pear scald development and the involvement of the scald trigger 6-methyl-5-hepten-2-one (MHO) in this process is rudimentary. Pyrus bretschneideri Rehd. cv. 'Dangshansuli' pear was used to validate such hypothesis. The results showed that superficial scald occurred after 120-d chilling exposure, which accompanied by typical PCD-associated morphological alterations, such as plasmolysis, cell shrinkage, cytosolic and nuclear condensation, vacuolar collapse, tonoplast disruption, subcellular organelle swelling, and DNA fragmentation. These symptoms were aggravated after MHO fumigation but alleviated by diphenylamine (DPA) dipping. Through transcriptome assay, 24 out of 146 PCD-related genes, which were transcribed during cold storage, were identified as the key candidate members responsible for these cellular biological alternations upon scald development. Among these, PbrCNGC1, PbrGnai1, PbrACD6, and PbrSOBIR1 were implicated in the MHO signaling pathway. Additionally, PbrWRKY2, 34 and 39 could bind to the W-box element in the promoter of PbrGnai1 or PbrSOBIR1 and activate their transcription, as confirmed by dual-luciferase, yeast one-hybrid, and transient overexpression assays. Hence, our study confirms the PCD initiation during scald development and explores the critical role of MHO in this process.

植物具有诱导程序性细胞死亡(PCD)的能力,以应对非生物和生物胁迫;然而,关于梨烫伤发育过程中PCD的启动以及烫伤触发因子6-甲基-5-庚烯-2-酮(MHO)参与这一过程的证据尚不充分。研究人员利用 Pyrus bretschneideri Rehd.结果表明,冷藏 120 天后会出现表皮烫伤,并伴有典型的 PCD 相关形态学改变,如浆解、细胞萎缩、细胞膜和细胞核缩合、液泡崩解、调质体破坏、亚细胞器肿胀和 DNA 断裂。这些症状在 MHO 熏蒸后加重,但在浸泡二苯胺(DPA)后减轻。通过转录组分析,在冷藏期间转录的 146 个 PCD 相关基因中,有 24 个被确定为在烫伤发生时导致这些细胞生物学变化的关键候选成员。其中,PbrCNGC1、PbrGnai1、PbrACD6 和 PbrSOBIR1 与 MHO 信号通路有关。此外,PbrWRKY2、34和39能与PbrGnai1或PbrSOBIR1启动子中的W-box元件结合并激活它们的转录,这已被双荧光素酶、酵母单杂交和瞬时过表达实验所证实。因此,我们的研究证实了烫伤发育过程中 PCD 的启动,并探讨了 MHO 在这一过程中的关键作用。
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引用次数: 0
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Molecular Horticulture
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