Importance of Some Specifications of Heterogeneous Architectures (CPU+GPU) for 3D Cone-Beam-CT Image Reconstruction Using OpenCL

Q4 Biochemistry, Genetics and Molecular Biology International Journal of Biology and Biomedical Engineering Pub Date : 2021-07-20 DOI:10.46300/91011.2021.15.33
T. Nouioua, A. H. Belbachir
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Abstract

Medical imaging has found an important way for routine daily practice using cone-beam computed tomography to reconstruct a 3D volume image using the Feldkamp-Davis-Kress (FDK) algorithm. This way can minimize the patient’s time exposure to X-rays. However, its implementation is very costly in computation time, which constitutes a handicap problem in practice. For this reason, the use of acceleration methods on GPU becomes a real solution. For the acceleration of the FDK algorithm, we have used the GPU on heterogeneous platforms. To take full advantage of the GPU, we have chosen useful features of the GPUs and, we have launched the acceleration of the reconstruction according to some technical criteria, namely the work-groups and the work-items. We have found that the number of parallel cores, as well as the memory bandwidth, have no effect on runtimes speedup without being rough in the choice of the number of work-items, which represents a real challenge to master in order to be able to divide them efficiently into work-groups according to the device specifications considered as principal difficulties if we do not study technically the GPU as a hardware device. After an optimized implementation using kernels launched optimally on GPU, we have deduced that the high capacities of the devices must be chosen with a rough optimization of the work-items which are divided into several work-groups according to the hardware limitations.
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异构体系结构(CPU+GPU)的一些规范对OpenCL三维锥束CT图像重建的重要性
医学成像已经找到了一种重要的方法,用于常规的日常实践,使用锥束计算机断层扫描重建三维体图像,使用Feldkamp-Davis-Kress (FDK)算法。这种方法可以减少病人暴露在x射线下的时间。然而,它的实现在计算时间上非常昂贵,这在实践中构成了一个障碍问题。因此,在GPU上使用加速方法成为一个真正的解决方案。为了加速FDK算法,我们在异构平台上使用了GPU。为了充分发挥GPU的优势,我们选择了GPU的有用特性,并根据一些技术标准(即工作组和工作项)启动了重构的加速。我们发现并行核的数量以及内存带宽对运行时加速没有影响,而不会在工作项数量的选择中产生粗略的影响,这代表了一个真正的挑战,以便能够根据被认为是主要困难的设备规格将它们有效地划分为工作组,如果我们不从技术上研究GPU作为硬件设备。在使用GPU上最优启动的内核进行优化实现后,我们推断出设备的高容量必须通过对工作项的粗略优化来选择,这些工作项根据硬件限制分为几个工作组。
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来源期刊
International Journal of Biology and Biomedical Engineering
International Journal of Biology and Biomedical Engineering Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
自引率
0.00%
发文量
42
期刊介绍: Topics: Molecular Dynamics, Biochemistry, Biophysics, Quantum Chemistry, Molecular Biology, Cell Biology, Immunology, Neurophysiology, Genetics, Population Dynamics, Dynamics of Diseases, Bioecology, Epidemiology, Social Dynamics, PhotoBiology, PhotoChemistry, Plant Biology, Microbiology, Immunology, Bioinformatics, Signal Transduction, Environmental Systems, Psychological and Cognitive Systems, Pattern Formation, Evolution, Game Theory and Adaptive Dynamics, Bioengineering, Biotechnolgies, Medical Imaging, Medical Signal Processing, Feedback Control in Biology and Chemistry, Fluid Mechanics and Applications in Biomedicine, Space Medicine and Biology, Nuclear Biology and Medicine.
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