{"title":"The complete genome sequence of Shewanella inventionis D1489 reveals its potential for the production of eicosapentaenoic acid","authors":"Jingjing Duan , Wenbin Guo","doi":"10.1016/j.margen.2022.100932","DOIUrl":null,"url":null,"abstract":"<div><p><em>Shewanella inventionis</em> D1489, isolated from a marine sediment sample from the Yap trench, is a psychrophile bacterium with optimal and maximum growth temperatures of 17 °C and 37 °C, respectively. Here, we present the complete genome of <em>Shewanella inventionis</em> D1489, which will facilitate the genome mining of eicosapentaenoic acid (EPA) biosynthesis coding gene cluster. The sequenced genome consists of 4,831,636 bases, with mean G + C content of 42.404%. A total of 4295 coding genes including 97 tRNAs and 25 rRNA were predicted in the genome. The genome provides basic genetic information for the understanding of its adaptation to cold environment.</p></div>","PeriodicalId":18321,"journal":{"name":"Marine genomics","volume":"62 ","pages":"Article 100932"},"PeriodicalIF":1.5000,"publicationDate":"2022-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Marine genomics","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1874778722000101","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 1
Abstract
Shewanella inventionis D1489, isolated from a marine sediment sample from the Yap trench, is a psychrophile bacterium with optimal and maximum growth temperatures of 17 °C and 37 °C, respectively. Here, we present the complete genome of Shewanella inventionis D1489, which will facilitate the genome mining of eicosapentaenoic acid (EPA) biosynthesis coding gene cluster. The sequenced genome consists of 4,831,636 bases, with mean G + C content of 42.404%. A total of 4295 coding genes including 97 tRNAs and 25 rRNA were predicted in the genome. The genome provides basic genetic information for the understanding of its adaptation to cold environment.
期刊介绍：
The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include:
• Population genomics and ecology
• Evolutionary and developmental genomics
• Comparative genomics
• Metagenomics
• Environmental genomics
• Systems biology
More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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