Advocating for reproducibility

IASSIST quarterly Pub Date : 2020-07-02 DOI:10.29173/iq982
H. Dekker, Amy Riegelman
{"title":"Advocating for reproducibility","authors":"H. Dekker, Amy Riegelman","doi":"10.29173/iq982","DOIUrl":null,"url":null,"abstract":"As guest editors, we are excited to publish this special double issue of IASSIST Quarterly. The topics of reproducibility, replicability, and transparency have been addressed in past issues of IASSIST Quarterly and at the IASSIST conference, but this double issue is entirely focused on these issues. \nIn recent years, efforts “to improve the credibility of science by advancing transparency, reproducibility, rigor, and ethics in research” have gained momentum in the social sciences (Center for Effective Global Action, 2020). While few question the spirit of the reproducibility and research transparency movement, it faces significant challenges because it goes against the grain of established practice. \nWe believe the data services community is in a unique position to help advance this movement given our data and technical expertise, training and consulting work, international scope, and established role in data management and preservation, and more. As evidence of the movement, several initiatives exist to support research reproducibility infrastructure and data preservation efforts: \n \nCenter for Open Science (COS) / Open Science Framework (OSF)[i] \nBerkeley Initiative for Transparency in the Social Sciences (BITSS)[ii] \nCUrating for REproducibility (CURE)[iii] \nProject Tier[iv] \nData Curation Network[v] \nUK Reproducibility Network[vi] \n \nWhile many new initiatives have launched in recent years, prior to the now commonly used phrase “reproducibility crisis” and Ioannidis publishing the essay, “Why Most Published Research Findings are False,” we know that the data services community was supporting reproducibility in a variety of ways (e.g., data management, data preservation, metadata standards) in wellestablished consortiums such as Inter-university Consortium for Political and Social Research (ICPSR) (Ioannidis, 2005). \nThe articles in this issue comprise several very important aspects of reproducible research: \n \nIdentification of barriers to reproducibility and solutions to such barriers \nEvidence synthesis as related to transparent reporting and reproducibility \nReflection on how information professionals, researchers, and librarians perceive the reproducibility crisis and how they can partner to help solve it. \n \nThe issue begins with “Reproducibility literature analysis” which looks at existing resources and literature to identify barriers to reproducibility and potential solutions. The authors have compiled a comprehensive list of resources with annotations that include definitions of key concepts pertinent to the reproducibility crisis. \nThe next article addresses data reuse from the perspective of a large research university. The authors examine instances of both successful and failed data reuse instances and identify best practices for librarians interested in conducting research involving the common forms of data collected in an academic library. \nSystematic reviews are a research approach that involves the quantitative and/or qualitative synthesis of data collected through a comprehensive literature review.  “Methods reporting that supports reader confidence for systematic reviews in psychology” looks at the reproducibility of electronic literature searches reported in psychology systematic reviews. \nA fundamental challenge in reproducing or replicating computational results is the need for researchers to make available the code used in producing these results. But sharing code and having it to run correctly for another user can present significant technical challenges. In “Reproducibility, preservation, and access to research with Reprozip, Reproserver” the authors describe open source software that they are developing to address these challenges.  \nTaking a published article and attempting to reproduce the results, is an exercise that is sometimes used in academic courses to highlight the inherent difficulty of the process. The final article in this issue, “ReprohackNL 2019: How libraries can promote research reproducibility through community engagement” describes an innovative library-based variation to this exercise. \n  \nHarrison Dekker, Data Librarian, University of Rhode Island \nAmy Riegelman, Social Sciences Librarian, University of Minnesota \n  \nReferences \nCenter for Effective Global Action (2020), About the Berkeley Initiative for Transparency in the Social Sciences. Available at: https://www.bitss.org/about (accessed 23 June 2020). \nIoannidis, J.P. (2005) ‘Why most published research findings are false’, PLoS Medicine, 2(8), p. e124.  doi:  https://doi.org/10.1371/journal.pmed.0020124 \n  \n[i] https://osf.io \n[ii] https://www.bitss.org/ \n[iii] http://cure.web.unc.edu \n[iv] https://www.projecttier.org/ \n[v] https://datacurationnetwork.org/ \n[vi] https://ukrn.org","PeriodicalId":84870,"journal":{"name":"IASSIST quarterly","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"IASSIST quarterly","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.29173/iq982","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

As guest editors, we are excited to publish this special double issue of IASSIST Quarterly. The topics of reproducibility, replicability, and transparency have been addressed in past issues of IASSIST Quarterly and at the IASSIST conference, but this double issue is entirely focused on these issues. In recent years, efforts “to improve the credibility of science by advancing transparency, reproducibility, rigor, and ethics in research” have gained momentum in the social sciences (Center for Effective Global Action, 2020). While few question the spirit of the reproducibility and research transparency movement, it faces significant challenges because it goes against the grain of established practice. We believe the data services community is in a unique position to help advance this movement given our data and technical expertise, training and consulting work, international scope, and established role in data management and preservation, and more. As evidence of the movement, several initiatives exist to support research reproducibility infrastructure and data preservation efforts: Center for Open Science (COS) / Open Science Framework (OSF)[i] Berkeley Initiative for Transparency in the Social Sciences (BITSS)[ii] CUrating for REproducibility (CURE)[iii] Project Tier[iv] Data Curation Network[v] UK Reproducibility Network[vi] While many new initiatives have launched in recent years, prior to the now commonly used phrase “reproducibility crisis” and Ioannidis publishing the essay, “Why Most Published Research Findings are False,” we know that the data services community was supporting reproducibility in a variety of ways (e.g., data management, data preservation, metadata standards) in wellestablished consortiums such as Inter-university Consortium for Political and Social Research (ICPSR) (Ioannidis, 2005). The articles in this issue comprise several very important aspects of reproducible research: Identification of barriers to reproducibility and solutions to such barriers Evidence synthesis as related to transparent reporting and reproducibility Reflection on how information professionals, researchers, and librarians perceive the reproducibility crisis and how they can partner to help solve it. The issue begins with “Reproducibility literature analysis” which looks at existing resources and literature to identify barriers to reproducibility and potential solutions. The authors have compiled a comprehensive list of resources with annotations that include definitions of key concepts pertinent to the reproducibility crisis. The next article addresses data reuse from the perspective of a large research university. The authors examine instances of both successful and failed data reuse instances and identify best practices for librarians interested in conducting research involving the common forms of data collected in an academic library. Systematic reviews are a research approach that involves the quantitative and/or qualitative synthesis of data collected through a comprehensive literature review.  “Methods reporting that supports reader confidence for systematic reviews in psychology” looks at the reproducibility of electronic literature searches reported in psychology systematic reviews. A fundamental challenge in reproducing or replicating computational results is the need for researchers to make available the code used in producing these results. But sharing code and having it to run correctly for another user can present significant technical challenges. In “Reproducibility, preservation, and access to research with Reprozip, Reproserver” the authors describe open source software that they are developing to address these challenges.  Taking a published article and attempting to reproduce the results, is an exercise that is sometimes used in academic courses to highlight the inherent difficulty of the process. The final article in this issue, “ReprohackNL 2019: How libraries can promote research reproducibility through community engagement” describes an innovative library-based variation to this exercise.   Harrison Dekker, Data Librarian, University of Rhode Island Amy Riegelman, Social Sciences Librarian, University of Minnesota   References Center for Effective Global Action (2020), About the Berkeley Initiative for Transparency in the Social Sciences. Available at: https://www.bitss.org/about (accessed 23 June 2020). Ioannidis, J.P. (2005) ‘Why most published research findings are false’, PLoS Medicine, 2(8), p. e124.  doi:  https://doi.org/10.1371/journal.pmed.0020124   [i] https://osf.io [ii] https://www.bitss.org/ [iii] http://cure.web.unc.edu [iv] https://www.projecttier.org/ [v] https://datacurationnetwork.org/ [vi] https://ukrn.org
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
提倡可重复性
作为客座编辑,我们很高兴能出版《国际会计准则与统计系统季刊》的双月刊特刊。可复制性、可复制性和透明度的主题在过去的《国际会计准则和统计系统季刊》和国际会计准则与统计系统会议上都有讨论,但这一双重问题完全集中在这些问题上。近年来,“通过提高研究的透明度、再现性、严谨性和伦理性来提高科学的可信度”的努力在社会科学中获得了势头(有效全球行动中心,2020)。虽然很少有人质疑再现性和研究透明度运动的精神,但它面临着重大挑战,因为它违背了既定的惯例。我们相信,鉴于我们的数据和技术专业知识、培训和咨询工作、国际范围以及在数据管理和保存方面的既定作用等,数据服务界在帮助推动这一运动方面处于独特的地位。作为运动的证据,有几个倡议支持研究再现性基础设施和数据保存工作:开放科学中心(COS)/开放科学框架(OSF)[i]伯克利社会科学透明度倡议(BITSS)[ii]可再生产性CUrating在现在常用的短语“再现性危机”和Ioannidis发表这篇文章之前,“为什么大多数已发表的研究结果都是错误的”,我们知道数据服务社区在建立良好的联盟中以各种方式支持再现性(例如,数据管理、数据保存、元数据标准),如大学间政治和社会研究联盟(ICPSR)(Ioannidis,2005)。本期文章包括可重复性研究的几个非常重要的方面:识别可重复性的障碍和这些障碍的解决方案与透明报告和可重复性相关的证据综合思考信息专业人员、研究人员,图书馆员了解再现性危机,以及他们如何合作帮助解决危机。问题始于“再现性文献分析”,该分析着眼于现有资源和文献,以确定再现性的障碍和潜在的解决方案。作者编制了一份全面的资源清单,并附有注释,其中包括与再现性危机相关的关键概念的定义。下一篇文章从一所大型研究型大学的角度讨论数据重用。作者检查了成功和失败的数据重用实例,并为有兴趣进行涉及学术图书馆收集的常见数据形式的研究的图书馆员确定了最佳实践。系统综述是一种研究方法,涉及对通过综合文献综述收集的数据进行定量和/或定性综合。“支持读者对心理学系统综述信心的方法报告”着眼于心理学系统综述中报告的电子文献搜索的可再现性。再现或复制计算结果的一个根本挑战是研究人员需要提供用于产生这些结果的代码。但是,共享代码并让它为另一个用户正确运行可能会带来重大的技术挑战。在“Reprozip,Reproserver的可复制性、保存和研究访问”中,作者描述了他们正在开发的开源软件,以应对这些挑战。取一篇发表的文章并试图复制结果,这是一种有时在学术课程中用来强调过程中固有困难的练习。本期的最后一篇文章《ReprohackNL 2019:图书馆如何通过社区参与促进研究再现性》描述了这项工作的一种基于图书馆的创新变体。Harrison Dekker,罗德岛大学数据馆员Amy Riegelman,明尼苏达大学有效全球行动参考中心社会科学馆员(2020),关于伯克利社会科学透明度倡议。网址:https://www.bitss.org/about(2020年6月23日查阅)。Ioannidis,J.P.(2005)“为什么大多数发表的研究结果都是假的”,《公共科学图书馆·医学》,2(8),第e124页。doi:https://doi.org/10.1371/journal.pmed.0020124[i]https://osf.io[ii]https://www.bitss.org/[ii]http://cure.web.unc.edu[iv]https://www.projecttier.org/[v]https://datacurationnetwork.org/[vi]https://ukrn.org
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Security and preservation of election data in Nigeria in the fourth industrial revolution Knowledge and perception of librarians towards cloud-based technology in academic libraries in southwest Nigeria Much new research, and advances for the IQ Data protection and right to privacy legislation in Kenya Guest editors’ notes
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1