Improvements in the phylogeny of Epilobium and Chamaenerion inferred from nrDNA and cpDNA data focusing on Türkiye

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY Accounts of Chemical Research Pub Date : 2023-01-01 DOI:10.55730/1300-008x.2753
Suzan Kundakçi, Serdar Makbul, Mutlu Gültepe, Murat Erdem Güzel, Seda Okur, K. Coşkunçelebi
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Abstract

: Epilobium and Chamaenerion included 165 and 8 species over the world, respectively. The members of the genera are distributed particularly in moist habitats from subpolar to tropical regions. This paper aims to provide improvements in the phylogeny of the genera Epilobium and Chamaenerion using Internal Transcribed Spacer (ITS) of nuclear DNA and mat K gene sequence data evaluation with maximum parsimony, maximum likelihood, and Bayesian inference criterations. A total of 188 individual accessions belonging to 28 taxa were newly generated and 110 sequences imported from GenBank (NCBI) were analysed. The nrDNA and plastid DNA gene trees supported to treat Epilobium and Chamaenerion as separate genera in two well-supported clades. The mat K analyses revealed a better resolution than nrDNA ITS within the Chamaenerion clade and supported the inclusion of C. angustifolium in the sect. Chamaenerion . However, most of the examined species mostly fell into the polytomy in both trees excluding E. roseum subsp. consimile which should be considered a distinct species in the Epilobium contrary to morphological treatment in many national flora books. Both phylogenetic trees also support distinguishing E. prionophyllum from E. anatolicum previously treated as a subspecies of E. anatolicum . In conclusion, these preliminary phylogenetic analyses have contributed significantly to the determination of the limits of members belonging to Epilobium and Chamaenerion distributed in Türkiye.
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从nrDNA和cpDNA数据推断毛霉属和Chamaenerion属的系统发育进展,重点是t rkiye
:沉香属和Chamaenerion属分别有165种和8种。属的成员特别分布在从副极地到热带地区的潮湿栖息地。本文旨在利用核DNA的内部转录间隔区(ITS)和具有最大简约性、最大似然性和贝叶斯推理标准的mat K基因序列数据评估,改进Epilobium属和Chamaenerion属的系统发育。共有188份新材料,隶属于28个分类群,并对从GenBank(NCBI)进口的110个序列进行了分析。nrDNA和质体DNA基因树支持将Epilobium和Chamaenerion作为两个支持良好的分支中的独立属处理。mat K分析显示,在Chamaenerion分支中的分辨率比nrDNA ITS更好,并支持将狭叶C.angustifolium包含在该教派中。Chamaenerion。然而,除玫瑰E.roseum亚种外,大多数被检查的物种大多属于这两种树的多聚体。与许多国家植物志中的形态学处理相反,紫苏属应该被认为是菊科中的一个独特物种。两个系统发育树也支持将普里叶E.prionophyllum与以前被视为锐钛矿E.anatolicum亚种的锐钛矿E.区分开来。总之,这些初步的系统发育分析对确定分布在土耳其的Epilobium和Chamaenerion成员的界限做出了重大贡献。
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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