Evaluation of risk-based surveillance strategies for Salmonella Dublin in Danish dairy herds by modelling temporal test performance and herd status classification errors

IF 3 4区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Microbial Risk Analysis Pub Date : 2021-12-01 DOI:10.1016/j.mran.2021.100184
Alessandro Foddai , Jørgen Nielsen , Liza Rosenbaum Nielsen , Erik Rattenborg , Hans Ebbensgaard Murillo , Johanne Ellis-Iversen
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Abstract

The potential risk-based improvement of the Salmonella Dublin surveillance programme in Danish dairy herds was investigated, considering herd status misclassifications due to testing errors. The programme started in October 2002. Currently (early 2021) all dairy herds are classified based on quarterly bulk tank milk (BTM) testing with an indirect antibody ELISA (iELISA). Over the last two decades, the prevalence of herds classified as “likely infected” (levels 2,3) reduced remarkably. However, since 2015, the apparent prevalence has increased again, calling for improved surveillance and control to protect animal and human health. A deterministic simulation model based on data (2018–2019) from 2283 dairy herds in level 1 (“most likely free from infection”), was developed to estimate status misclassifications as false negative (FN) and false positive (FP) herds, under two testing strategies. These were: (A) the current system based on quarterly BTM testing only, and (B) an alternative strategy based on additional blood testing of up to eight calves, within herds at high risk of infection (HR). Both strategies were evaluated using three risk classification methods (I to III) and four sensitivity analysis scenarios (SA1-4), where different temporal performances were simulated for the iELISA in BTM. To apply strategy B, the best high-risk classification method (II), which combined managerial applicability and minimized errors, would require testing approximately 1000 calves across 127 HR herds. In that case, strategy A would cause 3 FNs and 67 FPs, by assuming annual BTM sensitivity (BTMSe) 95% conditional on a 1-year disease history and specificity (BTMSp) 97%. Whereas strategy B could cause a similar number of FNs, but 7 FPs more, assuming a sensitivity (Se) of 77% and specificity (Sp) of 99% in individual blood-samples (SA1). Assuming also quarterly BTMSe 53% and BTMSp 99.9% (SA4), strategy A derived 28 FNs and 2 FPs, while strategy B resulted in 6 FNs less and 8 FPs more. Therefore, strategy B could improve early detection of infected HR herds, while strategy A would avoid more unnecessary restrictions in false-positive herds. This improves knowledge on the potential use of additional blood testing in HR herds and illustrates how deterministic modelling can be used to improve disease surveillance and control.

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通过模拟时间测试性能和牛群状态分类误差,评估丹麦奶牛群都柏林沙门氏菌风险监测策略
考虑到由于检测错误导致的畜群状态错误分类,对丹麦奶牛群中都柏林沙门氏菌监测计划的潜在风险改进进行了调查。该计划于2002年10月开始实施。目前(2021年初),所有奶牛群都是根据季度散装罐奶(BTM)测试进行分类的,测试采用间接抗体ELISA (iELISA)。在过去二十年中,被分类为“可能感染”(2、3级)的牛群的流行率显著降低。然而,自2015年以来,明显流行率再次上升,要求加强监测和控制,以保护动物和人类健康。基于2283个1级(“最有可能没有感染”)奶牛群的数据(2018-2019),开发了一个确定性模拟模型,以估计两种测试策略下假阴性(FN)和假阳性(FP)奶牛群的状态错误分类。这些是:(A)目前的系统仅基于季度BTM检测,以及(B)基于在感染高风险的畜群中对多达8头小牛进行额外血液检测的替代策略(HR)。采用三种风险分类方法(I至III)和四种敏感性分析情景(SA1-4)对这两种策略进行了评估,其中模拟了BTM中iELISA的不同时间性能。为了应用策略B,结合管理适用性和最小化错误的最佳高风险分类方法(II)将需要在127个HR群中测试大约1000头小牛。在这种情况下,策略A将导致3例FNs和67例FPs,假设每年BTM敏感性(BTMSe)为95%,条件是1年的疾病史,特异性(BTMSp)为97%。而策略B可能导致相似数量的FNs,但多7 FPs,假设单个血液样本的敏感性(Se)为77%,特异性(Sp)为99% (SA1)。同样假设季度BTMSe为53%,BTMSp为99.9% (SA4),策略A产生28个FNs和2个FPs,而策略B产生6个FNs和8个FPs。因此,B策略可以提高HR感染群体的早期发现,而A策略可以避免对假阳性群体进行更多不必要的限制。这提高了对HR畜群中可能使用额外血液检测的认识,并说明了如何使用确定性模型来改进疾病监测和控制。
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来源期刊
Microbial Risk Analysis
Microbial Risk Analysis Medicine-Microbiology (medical)
CiteScore
5.70
自引率
7.10%
发文量
28
审稿时长
52 days
期刊介绍: The journal Microbial Risk Analysis accepts articles dealing with the study of risk analysis applied to microbial hazards. Manuscripts should at least cover any of the components of risk assessment (risk characterization, exposure assessment, etc.), risk management and/or risk communication in any microbiology field (clinical, environmental, food, veterinary, etc.). This journal also accepts article dealing with predictive microbiology, quantitative microbial ecology, mathematical modeling, risk studies applied to microbial ecology, quantitative microbiology for epidemiological studies, statistical methods applied to microbiology, and laws and regulatory policies aimed at lessening the risk of microbial hazards. Work focusing on risk studies of viruses, parasites, microbial toxins, antimicrobial resistant organisms, genetically modified organisms (GMOs), and recombinant DNA products are also acceptable.
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