Revisit of the taxonomic status of Bos genus with special refference to north eastern hilly region of India

Q4 Biochemistry, Genetics and Molecular Biology Animal Gene Pub Date : 2023-03-01 DOI:10.1016/j.angen.2022.200143
Ningthoujam Neelima Devi , Bishal Dhar , Prasanta Kumar Bera , Yashmin Choudhury , Sankar Kumar Ghosh
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Abstract

North-eastern India has diverse Bos genus endemic animals which include Siri (Bos indicus), Yak (Bos grunniens) and Mithun (Bos frontalis). But very little is known about their origin and taxonomic position. Hence, a taxonomic revisit of the genesis needed to confirm their position in the family Bovidae. So, the present study focuses on molecular cataloguing through DNA barcoding and phylogenetic relationships. The generated CO1 sequences of Bos indicus, Bos grunniens, and Bos frontalis were analyzed through similarity search, Species delineation approach like K2P Distance, Neighbour-Joining tree and ML approaches to identify their taxonomic position with respect to global published data. The NJ tree revealed cohesive clustering of Bos indicus with the pre-existing sequences of zebu and taurine but distinct from other congeners. The collected specimen of Bos frontalis clustered distinctly from other congeners and failed to cluster with Bos gaurus, which nullifies the previous report of Bos frontalis as a domesticated form of Bos gaurus. Similarly, Bison bison clustered very closely with Bos grunniens as their nearest neighbour. This observation was confirmed by ML phylogeny. Our findings confirmed the Siri's species status as Bos indicus. Similarly, Bos frontalis is a different species within the genus Bos but not the domesticated form of Bos gaurus. The close clustering of Bos grunniens and Bison bison supported the previous reports, which suggest that the genus Bison should be regarded as a synonym of the genus Bos. Thus, the present study strongly recommends the revisiting of bovine taxonomy.

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印度东北部丘陵地区博斯属植物分类地位的再谈
印度东北部有多种Bos属特有动物,包括Siri(Bos indicus)、Yak(Bos grunniens)和Mithun(Bos frontalis)。但人们对它们的起源和分类地位知之甚少。因此,需要对其起源进行分类学上的重新审视,以确认其在牛科中的地位。因此,本研究的重点是通过DNA条形码和系统发育关系进行分子编目。通过相似性搜索、物种划分方法(如K2P距离)、邻居连接树和ML方法分析生成的印度博斯、格鲁尼斯博斯和额博斯的CO1序列,以确定其相对于全球公布数据的分类位置。NJ树揭示了Bos indicus与预先存在的zebu和牛磺酸序列的内聚聚类,但与其他同源物不同。收集到的Bos frontalis标本与其他同类标本明显聚类,未能与Bos gaurus聚类,这使之前关于Bos frontaris是Bos gaorus驯化形式的报道无效。类似地,野牛与作为它们最近邻居的德国野牛非常紧密地聚集在一起。ML系统发育证实了这一观察结果。我们的发现证实了Siri的物种地位,即Bosindicus。类似地,正面博斯是博斯属中的一个不同物种,但不是博斯gaurus的驯化形式。野牛和野牛的紧密集群支持了之前的报道,这些报道认为野牛属应该被视为Bos属的同义词。因此,本研究强烈建议重新审视牛的分类学。
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来源期刊
Animal Gene
Animal Gene Agricultural and Biological Sciences-Insect Science
自引率
0.00%
发文量
16
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
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