Monte Carlo performance study of virtual high performance computing cluster over cloud

Q1 Health Professions Radiation Medicine and Protection Pub Date : 2022-09-01 DOI:10.1016/j.radmp.2022.07.003
Libing Zhu , Ze Xi , Peng Cong , Gongyi Yu , Yuan Liu , Xincheng Xiang , Wei Xu , Xiangang Wang
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Abstract

Objective

As a high computation cost discipline, nuclear science and engineering still relies heavily on traditional high performance computing (HPC) clusters. However, the usage of traditional HPC for nuclear science and engineering has been limited due to the poor flexibility, the software compatibility and the poor user interfaces. Virtualized/virtual HPC (vHPC) can mimic an HPC by using a cloud computing platform. In this work, we designed and developed a vHPC system for employment in nuclear engineering.

Methods

The system is tested using the computation of the number π by Monte Carlo and an X-ray digital imaging system simulation. The performance of the vHPC system is compared with that of the traditional HPCs.

Results

As the number of the simulated particles increases, the virtual cluster computing time grows proportionally. The time used for the simulation of the X-ray imaging was about 21.1 ​h over a 12 kernels virtual server. Experimental results show that the performance of virtual cluster computing and the actual physical machine is almost the same.

Conclusions

From these tests, it is concluded that vHPC is a good alternative for employing in nuclear engineering. The proposed vHPC in this paper will make HPC flexible and easy to deploy.

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云上虚拟高性能计算集群的蒙特卡罗性能研究
目的核科学与工程作为一门计算成本较高的学科,仍然严重依赖传统的高性能计算集群。然而,传统的高性能计算技术由于灵活性差、软件兼容性差、用户界面差等问题,在核科学与工程中的应用受到了限制。虚拟化/虚拟HPC (vHPC)是一种利用云计算平台模拟HPC的技术。在这项工作中,我们设计和开发了一个用于核工程的超高压计算系统。方法采用蒙特卡罗计算π数和x射线数字成像系统模拟对系统进行了测试。并将该系统的性能与传统hpc系统进行了比较。结果随着模拟粒子数量的增加,虚拟集群计算时间成比例增长。在12个内核的虚拟服务器上,用于模拟x射线成像的时间约为21.1小时。实验结果表明,虚拟集群计算的性能与实际物理机基本一致。结论vHPC在核工程中具有较好的应用前景。本文提出的vHPC使HPC具有灵活性和易于部署的特点。
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来源期刊
Radiation Medicine and Protection
Radiation Medicine and Protection Health Professions-Emergency Medical Services
CiteScore
2.10
自引率
0.00%
发文量
0
审稿时长
103 days
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