Optical spectra of EGFR inhibitor AG-1478 for benchmarking DFT functionals

IF 2.9 Q3 CHEMISTRY, PHYSICAL Electronic Structure Pub Date : 2023-06-01 DOI:10.1088/2516-1075/ace015
Sallam Alagawani, V. Vasilyev, Feng Wang
{"title":"Optical spectra of EGFR inhibitor AG-1478 for benchmarking DFT functionals","authors":"Sallam Alagawani, V. Vasilyev, Feng Wang","doi":"10.1088/2516-1075/ace015","DOIUrl":null,"url":null,"abstract":"Optical spectroscopy (UV–vis and fluorescence spectroscopy) is sensitive to the chemical environment and conformation of fluorophores and therefore, serves as an ideal probe for the conformation and solvent responses. Tyrosine kinase inhibitors (TKI) such as AG-1478 of epidermal growth factor receptor when containing a quinazolinamine scaffold are fluorophores. It is, however, very important to benchmark density functional theory (DFT) method against optical spectral measurements, when time-dependent DFT is applied. In this study, the performance of up to 22 DFT functionals is benchmarked with respect to the measured optical spectra of AG-1478 in dimethyl sulfoxide (DMSO) solvent. It is discovered when combined with the 6–311++G(d, p) basis set, there are top seven functionals; B3PW91, B3LYP, B3P86, PBE1PBE, APFD, HSEH1PBE, and N12SX DFT-VXC functionals are identified as the top performers. Becke’s three-parameter exchange functional (B3) tends to generate accurate optical spectra to form the best three functionals, B3LYP, B3PW91 and B3P86. Specifically, B3PW91 was recommended for studying the optical properties of 4-quinazolinamine TKIs, B3LYP was found to be excellent for absorption spectrum, while B3P86 was identified as the best for emission spectrum. Any further corrections to B3LYP, such as CAM-B3LYP, LC-B3LYP, and B3LYP-D3 result in larger errors in the optical spectra of AG-1478 in DMSO solvent. These best three (B3Vc) functionals are reliable tools for optical properties of the TKIs and therefore the design of new agents with larger Stokes shift for medical image applications. To obtain reliable optical spectra for this class of 4-quinazolinamine based TKIs, it is important to include the electron correlation energy.","PeriodicalId":42419,"journal":{"name":"Electronic Structure","volume":" ","pages":""},"PeriodicalIF":2.9000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Electronic Structure","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1088/2516-1075/ace015","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

Abstract

Optical spectroscopy (UV–vis and fluorescence spectroscopy) is sensitive to the chemical environment and conformation of fluorophores and therefore, serves as an ideal probe for the conformation and solvent responses. Tyrosine kinase inhibitors (TKI) such as AG-1478 of epidermal growth factor receptor when containing a quinazolinamine scaffold are fluorophores. It is, however, very important to benchmark density functional theory (DFT) method against optical spectral measurements, when time-dependent DFT is applied. In this study, the performance of up to 22 DFT functionals is benchmarked with respect to the measured optical spectra of AG-1478 in dimethyl sulfoxide (DMSO) solvent. It is discovered when combined with the 6–311++G(d, p) basis set, there are top seven functionals; B3PW91, B3LYP, B3P86, PBE1PBE, APFD, HSEH1PBE, and N12SX DFT-VXC functionals are identified as the top performers. Becke’s three-parameter exchange functional (B3) tends to generate accurate optical spectra to form the best three functionals, B3LYP, B3PW91 and B3P86. Specifically, B3PW91 was recommended for studying the optical properties of 4-quinazolinamine TKIs, B3LYP was found to be excellent for absorption spectrum, while B3P86 was identified as the best for emission spectrum. Any further corrections to B3LYP, such as CAM-B3LYP, LC-B3LYP, and B3LYP-D3 result in larger errors in the optical spectra of AG-1478 in DMSO solvent. These best three (B3Vc) functionals are reliable tools for optical properties of the TKIs and therefore the design of new agents with larger Stokes shift for medical image applications. To obtain reliable optical spectra for this class of 4-quinazolinamine based TKIs, it is important to include the electron correlation energy.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
EGFR抑制剂AG-1478的光谱用于DFT泛函的基准测试
光学光谱(UV-vis和荧光光谱)对化学环境和荧光团的构象敏感,因此是构象和溶剂响应的理想探针。酪氨酸激酶抑制剂(TKI)如表皮生长因子受体AG-1478在含有喹唑啉胺支架时是荧光团。然而,当应用时变DFT时,将密度泛函理论(DFT)方法与光谱测量相比较是非常重要的。在本研究中,针对AG-1478在二甲亚砜(DMSO)溶剂中的测量光谱,对多达22个DFT官能团的性能进行了基准测试。结合6-311 ++G(d, p)基集,发现有前7个泛函;B3PW91、B3LYP、B3P86、PBE1PBE、APFD、HSEH1PBE和N12SX DFT-VXC功能被认为是表现最好的。Becke的三参数交换泛函(B3)倾向于生成精确的光谱,形成最佳的三个泛函B3LYP、B3PW91和B3P86。其中,B3PW91被推荐用于研究4-喹唑啉胺类TKIs的光学性质,B3LYP在吸收光谱上表现优异,而B3P86在发射光谱上表现最佳。再对B3LYP进行修正,如CAM-B3LYP、LC-B3LYP、B3LYP- d3等,会导致AG-1478在DMSO溶剂中的光谱误差增大。这三个最佳(B3Vc)功能是tki光学特性的可靠工具,因此可以设计用于医学图像应用的具有更大斯托克斯位移的新试剂。为了获得这类4-喹唑啉胺基TKIs的可靠光谱,重要的是要包括电子相关能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
3.70
自引率
11.50%
发文量
46
期刊最新文献
Improving the precision of work-function calculations within plane-wave density functional theory Self-similarity of quantum transport in graphene using electrostatic gate and substrate Facilities and practices for linear response Hubbard parameters U and J in Abinit Approaching periodic systems in ensemble density functional theory via finite one-dimensional models Doping dependence and multichannel mediators of superconductivity: calculations for a cuprate model
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1