DNA Barcoding of Selected Medicinal Plant Species from Jordan Using matK, rbcL, and rpoC1 Genes

Q4 Biochemistry, Genetics and Molecular Biology International Journal of Biology and Biomedical Engineering Pub Date : 2021-10-21 DOI:10.46300/91011.2021.15.46
Almuthanna K. Alkaraki, Maisam A Aldmoor, J. Lahham, S. Nusair
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Abstract

Medicinal plants play an essential role in preventing and treating several diseases. Classical taxonomic tools generally carry out medicinal plant identification and characterization. Unfortunately, conventional methods need well-trained taxonomists and could give a false identity for closely related species. Jordanian flora is rich in a variety of plant species. The phylogeographic architecture of Jordanian medicinal plant samples was not explored yet. This study aims to recruit DNA barcoding using matK, rbcL, and rpoC1 genes to identify different selected medicinal plants species from Jordan. These are Maerua crassifolia, Ziziphus spina-christi, Balanites aegyptiaca, Senna italica, and Moringa peregrina. Plant samples were collected from the Dead Sea area (Jordan), and three DNA barcode regions were amplified, sequenced, and analyzed using different bioinformatic tools. Twelve sequences were obtained and deposited in Genbank . These sequences showed a very good discrimination capacity with sequences retrieved from related species. The phylogenetic analysis illustrated that DNA barcoding could successfully identify the selected medicinal plant species using different chloroplast genes (rbcL, matK, and rpoC1). Further analysis for other plants species is recommended to explore the genetic relationship and the phylogeographic architecture for Jordanian flora.
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利用matK、rbcL和rpoC1基因对约旦部分药用植物进行DNA条形码研究
药用植物在预防和治疗多种疾病方面发挥着重要作用。经典的分类工具一般用于药用植物的鉴定和鉴定。不幸的是,传统的方法需要训练有素的分类学家,并且可能会给密切相关的物种一个错误的身份。约旦的植物种类丰富。约旦药用植物样本的系统地理结构尚未探索。本研究旨在利用matK、rbcL和rpoC1基因进行DNA条形码鉴定约旦不同药用植物种类。它们是毛蕊花、紫皮花、埃及巴兰、意大利塞纳和辣木。从死海地区(约旦)采集植物样本,使用不同的生物信息学工具对三个DNA条形码区域进行扩增、测序和分析。获得12个序列,并存入Genbank。这些序列与近缘种检索到的序列具有很好的识别能力。系统发育分析表明,DNA条形码技术可以成功地利用不同的叶绿体基因(rbcL、matK和rpoC1)对选定的药用植物进行鉴定。建议对其他植物进行进一步分析,以探索约旦植物区系的亲缘关系和系统地理结构。
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来源期刊
International Journal of Biology and Biomedical Engineering
International Journal of Biology and Biomedical Engineering Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)
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发文量
42
期刊介绍: Topics: Molecular Dynamics, Biochemistry, Biophysics, Quantum Chemistry, Molecular Biology, Cell Biology, Immunology, Neurophysiology, Genetics, Population Dynamics, Dynamics of Diseases, Bioecology, Epidemiology, Social Dynamics, PhotoBiology, PhotoChemistry, Plant Biology, Microbiology, Immunology, Bioinformatics, Signal Transduction, Environmental Systems, Psychological and Cognitive Systems, Pattern Formation, Evolution, Game Theory and Adaptive Dynamics, Bioengineering, Biotechnolgies, Medical Imaging, Medical Signal Processing, Feedback Control in Biology and Chemistry, Fluid Mechanics and Applications in Biomedicine, Space Medicine and Biology, Nuclear Biology and Medicine.
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