Distinct stereospecific effect of chiral tether between a tag and protein on the rigidity of paramagnetic tag

IF 1.3 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Biomolecular NMR Pub Date : 2022-07-16 DOI:10.1007/s10858-022-00399-9
Jia-Liang Chen, Bin Li, Bo Ma, Xun-Cheng Su
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Abstract

Flexibility between the paramagnetic tag and its protein conjugates is a common yet unresolved issue in the applications of paramagnetic NMR spectroscopy in biological systems. The flexibility greatly attenuates the magnetic anisotropy and compromises paramagnetic effects especially for pseudocontact shift and residual dipolar couplings. Great efforts have been made to improve the rigidity of paramagnetic tag in the protein conjugates, however, the effect of local environment vicinal to the protein ligation site on the paramagnetic effects remains poorly understood. In the present work, the stereospecific effect of chiral tether between the protein and a tag on the paramagnetic effects produced by the tag attached via a D- and L-type linker between the protein and paramagnetic metal chelating moiety was assessed. The remarkable chiral effect of the D- and L-type tether between the tag and the protein on the rigidity of paramagnetic tag is disclosed in a number of protein-tag-Ln complexes. The chiral tether formed between the D-type tag and L-type protein surface minimizes the effect of the local environment surrounding the ligation site on the averaging of paramagnetic tag, which is helpful to preserve the rigidity of a paramagnetic tag in the protein conjugates.

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标签与蛋白质之间的手性系链对顺磁标签刚性的立体特异性影响
顺磁标签及其蛋白质偶联物之间的灵活性是顺磁核磁共振波谱在生物系统中的应用中一个常见但尚未解决的问题。柔性极大地减弱了磁各向异性,并损害了顺磁效应,特别是对于假接触位移和残余偶极耦合。为了提高蛋白质偶联物中顺磁标签的刚性,人们已经做了大量的工作,然而,蛋白质连接位点附近的局部环境对顺磁效应的影响尚不清楚。本研究评估了蛋白质与标签之间的手性系链对通过蛋白质与顺磁性金属螯合部分之间的D型和l型连接体连接的标签所产生的顺磁性效应的立体特异性效应。在许多蛋白质-标签- ln配合物中揭示了标签与蛋白质之间的D型和l型系链对顺磁性标签刚性的显著手性效应。d型标签与l型蛋白表面之间形成的手性系链,使结扎位点周围局部环境对顺磁标签平均的影响降到最低,有利于保持蛋白质偶联物中顺磁标签的刚性。
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来源期刊
Journal of Biomolecular NMR
Journal of Biomolecular NMR 生物-光谱学
CiteScore
6.00
自引率
3.70%
发文量
19
审稿时长
6-12 weeks
期刊介绍: The Journal of Biomolecular NMR provides a forum for publishing research on technical developments and innovative applications of nuclear magnetic resonance spectroscopy for the study of structure and dynamic properties of biopolymers in solution, liquid crystals, solids and mixed environments, e.g., attached to membranes. This may include: Three-dimensional structure determination of biological macromolecules (polypeptides/proteins, DNA, RNA, oligosaccharides) by NMR. New NMR techniques for studies of biological macromolecules. Novel approaches to computer-aided automated analysis of multidimensional NMR spectra. Computational methods for the structural interpretation of NMR data, including structure refinement. Comparisons of structures determined by NMR with those obtained by other methods, e.g. by diffraction techniques with protein single crystals. New techniques of sample preparation for NMR experiments (biosynthetic and chemical methods for isotope labeling, preparation of nutrients for biosynthetic isotope labeling, etc.). An NMR characterization of the products must be included.
期刊最新文献
Perspective: on the importance of extensive, high-quality and reliable deposition of biomolecular NMR data in the age of artificial intelligence. 19F NMR relaxation of buried tryptophan side chains suggest anisotropic rotational diffusion of the protein RfaH. Pitfalls in measurements of R1 relaxation rates of protein backbone 15N nuclei. Towards cost-effective side-chain isotope labelling of proteins expressed in human cells. Optimising in-cell NMR acquisition for nucleic acids.
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