AUTOMATED SEGMENTATION OF CORPUS CALLOSUM IN BRAIN MR IMAGES IN ALZHEIMER’S CONDITIONS USING IMPROVED UNET++ MODEL

Shabina Shaikh, Nagarajan Ganapathy, R. Swaminathan
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Abstract

The Corpus Callosum (CC) is a large white matter bundle that connects the left and right cerebral hemispheres of the human brain. It is susceptible to atrophy as Alzheimer’s disease progresses. The robust segmentation of CC allows quantitative investigation of its structural changes. However, deep learning-based CC segmentation is less explored. In this work, an improved UNet model is proposed for CC segmentation from two-dimensional T1-weighted mid-sagittal brain MRI. For this, mid-sagittal scans (n = 184) from the publicly available Open Access Series of Imaging Studies (OASIS) brain MRI database are used. The images are fed to an improved UNet++ network. The architecture contains a fully convolutional network with two paths, contracting and extracting, that are connected in a U-shape to automatically extract spatial information. Leave one out Cross-Validation (LooCV) method is used to evaluate the robustness of the proposed method. Results show that the proposed approach is able to segment CC from MR images. The proposed method yields the Dice score of 98.43%, and Jaccard index of 98.53%. The improved UNet++ model obtained the highest sensitivity of 99.21% for AD conditions. Further, the performance of the proposed model has been validated against the state-of-the-art methods. Thus, the proposed approach could be useful for the segmentation of MR images in clinical condition.
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利用改进的UNET++模型自动分割阿尔茨海默病患者脑MR图像中的胼胝体
胼胝体(CC)是一个连接人脑左右半球的大白质束。随着阿尔茨海默病的发展,它很容易萎缩。CC的稳健分割允许对其结构变化进行定量研究。然而,基于深度学习的CC分割研究较少。在这项工作中,提出了一种改进的UNet模型,用于从二维T1加权的中矢状脑MRI中分割CC。为此,使用来自公开的开放获取成像研究系列(OASIS)大脑MRI数据库的中矢状面扫描(n=184)。这些图像被提供给一个改进的UNet++网络。该架构包含一个完全卷积网络,具有两条路径,收缩和提取,以U形连接,以自动提取空间信息。使用留一交叉验证(LooCV)方法来评估所提出方法的稳健性。结果表明,该方法能够从MR图像中分割出CC。该方法的Dice评分为98.43%,Jaccard指数为98.53%。改进的UNet++模型对AD条件的灵敏度最高,为99.21%。此外,所提出的模型的性能已经与最先进的方法进行了验证。因此,所提出的方法可用于临床条件下的MR图像分割。
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