Thibauld Michel, Yu-Hseng Tseng, H. Wilson, Kuo-Fang Chung, C. Kidner
{"title":"A HYBRID CAPTURE BAIT SET FOR BEGONIA","authors":"Thibauld Michel, Yu-Hseng Tseng, H. Wilson, Kuo-Fang Chung, C. Kidner","doi":"10.24823/ejb.2022.409","DOIUrl":null,"url":null,"abstract":"Hybrid capture with baits has proven to be a rich source of genetic data for many genera. The depth of information provided allows resolution of rapid radiations and of deep phylogenetic patterns. Retrieved data can also be used for population genetic studies and analysis of functional genetic diversity. To gain a better understanding of the evolutionary patterns across this large, diverse and fascinating genus through phylogenetics, population genetics and sequence analysis, we have designed and tested a set of 1239 baits covering low copy number and functionally annotated genes involved in shade adaptation and development and genetically linked to key traits. We demonstrate successful recovery of sequence data from species across Begonia and from fresh, silica-dried and older herbarium material. ","PeriodicalId":39376,"journal":{"name":"Edinburgh Journal of Botany","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-08-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Edinburgh Journal of Botany","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.24823/ejb.2022.409","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 4
Abstract
Hybrid capture with baits has proven to be a rich source of genetic data for many genera. The depth of information provided allows resolution of rapid radiations and of deep phylogenetic patterns. Retrieved data can also be used for population genetic studies and analysis of functional genetic diversity. To gain a better understanding of the evolutionary patterns across this large, diverse and fascinating genus through phylogenetics, population genetics and sequence analysis, we have designed and tested a set of 1239 baits covering low copy number and functionally annotated genes involved in shade adaptation and development and genetically linked to key traits. We demonstrate successful recovery of sequence data from species across Begonia and from fresh, silica-dried and older herbarium material.
期刊介绍:
Edinburgh Journal of Botany is an international journal of plant systematics covering related aspects of biodiversity, conservation science and phytogeography for plants and fungi. The journal is a particularly valued forum for research on South East and South West Asian, Sino-Himalayan and Brazilian biodiversity. The journal also publishes important work on European, Central American and African biodiversity and encourages submissions from throughout the world. Commissioned book reviews are also included. All papers are peer reviewed and an international editorial board provides a body of expertise to reflect the wide range of work published and the geographical spread of the journal’s authors and readers. Published on behalf of the Royal Botanic Garden Edinburgh