A brief account of evolution of assays to study carbohydrate—protein interaction

IF 2.3 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Recognition Pub Date : 2023-10-20 DOI:10.1002/jmr.3065
Suhas Ballal
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Abstract

Molecular recognition remains one of the most desirable means of cellular communication. Each cell offers a unique surface pattern of biomolecules that makes it very specific about the nature of molecules that interact with the cell. Protein–glycan interaction has been one of the most common forms of cell signaling. Glycans expressed on the cell surface interact with an exogenous protein, and in many cases lead to a physiological response. These carbohydrate-binding proteins, commonly known as lectins, are very specific to the glycan they bind to. An exogenous lectin interacting with an animal cell surface glycan is generally studied using the classical hemagglutination assay. However, this method presents certain challenges that make it imperative to design and develop novel methods that are more specific and efficient in their interaction. In the last decade, a few methods have been developed to analyze more diverse reactions and use a lesser amount of sample. In some cases, the processing of the sample is also reduced. This review discusses how the methods have evolved over the decades and how they have reduced error while becoming more efficient.

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简要介绍研究碳水化合物-蛋白质相互作用的测定法的发展。
分子识别仍然是细胞通讯最理想的手段之一。每个细胞都提供了独特的生物分子表面模式,这使得它对与细胞相互作用的分子的性质非常具体。蛋白-聚糖相互作用是细胞信号传导最常见的形式之一。在细胞表面表达的甘氨酸与外源蛋白相互作用,在许多情况下导致生理反应。这些碳水化合物结合蛋白,通常被称为凝集素,对其结合的聚糖非常特异。通常使用经典的血凝测定法研究与动物细胞表面聚糖相互作用的外源凝集素。然而,这种方法带来了某些挑战,因此必须设计和开发更具体、更有效的新方法。在过去的十年里,已经开发了一些方法来分析更多样的反应,并使用更少的样本。在某些情况下,样本的处理也会减少。这篇综述讨论了这些方法在几十年中是如何演变的,以及它们是如何在提高效率的同时减少错误的。
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来源期刊
Journal of Molecular Recognition
Journal of Molecular Recognition 生物-生化与分子生物学
CiteScore
4.60
自引率
3.70%
发文量
68
审稿时长
2.7 months
期刊介绍: Journal of Molecular Recognition (JMR) publishes original research papers and reviews describing substantial advances in our understanding of molecular recognition phenomena in life sciences, covering all aspects from biochemistry, molecular biology, medicine, and biophysics. The research may employ experimental, theoretical and/or computational approaches. The focus of the journal is on recognition phenomena involving biomolecules and their biological / biochemical partners rather than on the recognition of metal ions or inorganic compounds. Molecular recognition involves non-covalent specific interactions between two or more biological molecules, molecular aggregates, cellular modules or organelles, as exemplified by receptor-ligand, antigen-antibody, nucleic acid-protein, sugar-lectin, to mention just a few of the possible interactions. The journal invites manuscripts that aim to achieve a complete description of molecular recognition mechanisms between well-characterized biomolecules in terms of structure, dynamics and biological activity. Such studies may help the future development of new drugs and vaccines, although the experimental testing of new drugs and vaccines falls outside the scope of the journal. Manuscripts that describe the application of standard approaches and techniques to design or model new molecular entities or to describe interactions between biomolecules, but do not provide new insights into molecular recognition processes will not be considered. Similarly, manuscripts involving biomolecules uncharacterized at the sequence level (e.g. calf thymus DNA) will not be considered.
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