Framework for converting mechanistic network models to probabilistic models.

IF 2.2 4区 数学 Q2 MATHEMATICS, INTERDISCIPLINARY APPLICATIONS Journal of complex networks Pub Date : 2023-10-20 eCollection Date: 2023-10-01 DOI:10.1093/comnet/cnad034
Ravi Goyal, Victor De Gruttola, Jukka-Pekka Onnela
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Abstract

There are two prominent paradigms for the modelling of networks: in the first, referred to as the mechanistic approach, one specifies a set of domain-specific mechanistic rules that are used to grow or evolve the network over time; in the second, referred to as the probabilistic approach, one describes a model that specifies the likelihood of observing a given network. Mechanistic models (models developed based on the mechanistic approach) are appealing because they capture scientific processes that are believed to be responsible for network generation; however, they do not easily lend themselves to the use of inferential techniques when compared with probabilistic models. We introduce a general framework for converting a mechanistic network model (MNM) to a probabilistic network model (PNM). The proposed framework makes it possible to identify the essential network properties and their joint probability distribution for some MNMs; doing so makes it possible to address questions such as whether two different mechanistic models generate networks with identical distributions of properties, or whether a network property, such as clustering, is over- or under-represented in the networks generated by the model of interest compared with a reference model. The proposed framework is intended to bridge some of the gap that currently exists between the formulation and representation of mechanistic and PNMs. We also highlight limitations of PNMs that need to be addressed in order to close this gap.

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将机械网络模型转换为概率模型的框架。
网络建模有两种突出的范式:第一种被称为机械方法,一种指定了一组特定于领域的机械规则,用于随着时间的推移发展网络;在第二种方法中,被称为概率方法,描述了一个指定观察给定网络的可能性的模型。机械模型(基于机械方法开发的模型)很有吸引力,因为它们捕捉了被认为是网络生成的科学过程;然而,与概率模型相比,它们不容易使用推理技术。我们介绍了一个将机械网络模型(MNM)转换为概率网络模型(PNM)的通用框架。所提出的框架使识别一些MNM的基本网络属性及其联合概率分布成为可能;这样做可以解决这样的问题,例如两个不同的机制模型是否生成具有相同属性分布的网络,或者与参考模型相比,感兴趣的模型生成的网络中的网络属性(例如聚类)是否过度或不足。拟议的框架旨在弥合目前在机械和PNM的表述和表示之间存在的一些差距。我们还强调了需要解决的PNM的局限性,以缩小这一差距。
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来源期刊
Journal of complex networks
Journal of complex networks MATHEMATICS, INTERDISCIPLINARY APPLICATIONS-
CiteScore
4.20
自引率
9.50%
发文量
40
期刊介绍: Journal of Complex Networks publishes original articles and reviews with a significant contribution to the analysis and understanding of complex networks and its applications in diverse fields. Complex networks are loosely defined as networks with nontrivial topology and dynamics, which appear as the skeletons of complex systems in the real-world. The journal covers everything from the basic mathematical, physical and computational principles needed for studying complex networks to their applications leading to predictive models in molecular, biological, ecological, informational, engineering, social, technological and other systems. It includes, but is not limited to, the following topics: - Mathematical and numerical analysis of networks - Network theory and computer sciences - Structural analysis of networks - Dynamics on networks - Physical models on networks - Networks and epidemiology - Social, socio-economic and political networks - Ecological networks - Technological and infrastructural networks - Brain and tissue networks - Biological and molecular networks - Spatial networks - Techno-social networks i.e. online social networks, social networking sites, social media - Other applications of networks - Evolving networks - Multilayer networks - Game theory on networks - Biomedicine related networks - Animal social networks - Climate networks - Cognitive, language and informational network
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