Automated detection of multi-class urinary sediment particles: An accurate deep learning approach

IF 5.3 2区 医学 Q1 ENGINEERING, BIOMEDICAL Biocybernetics and Biomedical Engineering Pub Date : 2023-10-01 DOI:10.1016/j.bbe.2023.09.003
He Lyu , Fanxin Xu , Tao Jin , Siyi Zheng , Chenchen Zhou , Yang Cao , Bin Luo , Qinzhen Huang , Wei Xiang , Dong Li
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Abstract

Urine microscopy is an essential diagnostic tool for kidney and urinary tract diseases, with automated analysis of urinary sediment particles improving diagnostic efficiency. However, some urinary sediment particles remain challenging to identify due to individual variations, blurred boundaries, and unbalanced samples. This research aims to mitigate the adverse effects of urine sediment particles while improving multi-class detection performance. We proposed an innovative model based on improved YOLOX for detecting urine sediment particles (YUS-Net). The combination of urine sediment data augmentation and overall pre-trained weights enhances model optimization potential. Furthermore, we incorporate the attention module into the critical feature transfer path and employ a novel loss function, Varifocal loss, to facilitate the extraction of discriminative features, which assists in the identification of densely distributed small objects. Based on the USE dataset, YUS-Net achieves the mean Average Precision (mAP) of 96.07%, 99.35% average precision, and 96.77% average recall, with a latency of 26.13 ms per image. The specific metrics for each category are as follows: cast: 99.66% AP; cryst: 100% AP; epith: 92.31% AP; epithn: 100% AP; eryth: 92.31% AP; leuko: 99.90% AP; mycete: 99.96% AP. With a practical network structure, YUS-Net achieved efficient, accurate, end-to-end urinary sediment particle detection. The model takes native high-resolution images as input without additional steps. Finally, a data augmentation strategy appropriate for the urinary microscopic image domain is established, which provides a novel approach for applying other methods in urine microscopic images.

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多类尿液沉淀物颗粒的自动检测:一种精确的深度学习方法
尿液显微镜是肾脏和泌尿道疾病的重要诊断工具,尿液沉积物颗粒的自动分析提高了诊断效率。然而,由于个体差异、边界模糊和样本不平衡,一些尿沉渣颗粒仍然难以识别。本研究旨在减轻尿液沉积物颗粒的不良影响,同时提高多类检测性能。我们提出了一种基于改进YOLOX的尿沉渣颗粒检测创新模型(YUS-Net)。尿沉渣数据增强和整体预训练权重的结合增强了模型优化的潜力。此外,我们将注意力模块纳入关键特征转移路径,并使用一种新的损失函数Varifocur损失来促进判别特征的提取,这有助于识别密集分布的小物体。基于USE数据集,YUS-Net的平均准确度(mAP)为96.07%,平均准确度为99.35%,平均召回率为96.77%,延迟为26.13 ms每幅图像。每个类别的具体指标如下:铸造:99.66%的AP;晶体:100%AP;表位:92.31%AP;表位:100%AP;红斑:92.31%的AP;白细胞:99.90%AP;霉菌:99.96%的AP。YUS Net采用实用的网络结构,实现了高效、准确、端到端的尿沉渣颗粒检测。该模型采用本地高分辨率图像作为输入,无需额外步骤。最后,建立了一种适用于尿液显微图像领域的数据增强策略,为在尿液显微图像中应用其他方法提供了一种新的方法。
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来源期刊
CiteScore
16.50
自引率
6.20%
发文量
77
审稿时长
38 days
期刊介绍: Biocybernetics and Biomedical Engineering is a quarterly journal, founded in 1981, devoted to publishing the results of original, innovative and creative research investigations in the field of Biocybernetics and biomedical engineering, which bridges mathematical, physical, chemical and engineering methods and technology to analyse physiological processes in living organisms as well as to develop methods, devices and systems used in biology and medicine, mainly in medical diagnosis, monitoring systems and therapy. The Journal''s mission is to advance scientific discovery into new or improved standards of care, and promotion a wide-ranging exchange between science and its application to humans.
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