Time-of-flight spin-echo small-angle neutron scattering applied to biological cell nuclei

IF 5.2 3区 材料科学 Q2 CHEMISTRY, MULTIDISCIPLINARY Journal of Applied Crystallography Pub Date : 2023-09-27 DOI:10.1107/S1600576723007549
Ekaterina G. Iashina, Wim G. Bouwman, Chris P. Duif, Robert Dalgliesh, Elena Y. Varfolomeeva, Rimma A. Pantina, Roman A. Kovalev, Natalia D. Fedorova, Sergey V. Grigoriev
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Abstract

The organization of chromatin in the nuclei of rat lymphocyte was studied by time-of-flight spin-echo small-angle neutron scattering (ToF-SESANS). The procedures of the measurements in ToF and monochromatic SESANS modes were compared. It is shown that the sensitivity of the ToF method is significantly higher than that of the monochromatic mode. As a result, the SESANS correlation function can always be extracted from the ToF measurement of polarization, while this is not always the case with the monochromatic mode. The applicability of SESANS to fractal objects at the micrometre scale is demonstrated. The SESANS correlation function is well fitted by the exponential decay G(z) = exp(−z/ξ) with the correlation length ξ = 3.7 ± 0.1 µm. The exponential decay of the SESANS correlation function can be connected to the logarithmic correlation function γ(r) = ln(r/ξ) and the cubic law of the scattering intensity I(Q) = Q−3, which is in agreement with the concept of scattering from fractal objects. This finding is interpreted as evidence of a very specific logarithmic fractal structure of the large-scale organization of chromatin. The model of the logarithmic fractal is visualized as a hierarchical object obeying the volume-conservation principle at different scales.

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飞行时间自旋回波小角度中子散射在生物细胞核中的应用
用飞行时间自旋回波小角度中子散射(ToF-SESANS)研究了大鼠淋巴细胞细胞核染色质的组织。比较了ToF和单色SESANS模式下的测量程序。结果表明,ToF方法的灵敏度明显高于单色模式。因此,SESANS相关函数总是可以从偏振的ToF测量中提取,而单色模式并不总是这样。证明了SESANS在微米尺度上对分形物体的适用性。SESANS相关函数由指数衰减G(z)=exp(−z/ξ)和相关长度ξ=3.7很好地拟合 ± 0.1 µm。SESANS相关函数的指数衰减可以连接到对数相关函数γ(r)=ln(r/ξ)和散射强度的三次律I(Q)=Q−3,这与分形物体散射的概念一致。这一发现被解释为染色质大规模组织的一种非常特殊的对数分形结构的证据。对数分形模型被可视化为在不同尺度上遵循体积守恒原理的分层对象。
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来源期刊
Journal of Applied Crystallography
Journal of Applied Crystallography CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
7.80
自引率
3.30%
发文量
178
期刊介绍: Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.
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