Enhanced transformation efficiency in Treponema denticola enabled by SyngenicDNA-based plasmids lacking restriction-modification target motifs.

IF 2.8 3区 医学 Q1 DENTISTRY, ORAL SURGERY & MEDICINE Molecular Oral Microbiology Pub Date : 2023-12-01 Epub Date: 2023-10-25 DOI:10.1111/omi.12441
Christopher D Johnston, M Paula Goetting-Minesky, Kelly Kennedy, Valentina Godovikova, Sara M Zayed, Richard J Roberts, J Christopher Fenno
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Abstract

Oral spirochetes are among a small group of keystone pathogens contributing to dysregulation of tissue homeostatic processes that leads to breakdown of the tissue and bone supporting the teeth in periodontal disease. Additionally, our group has recently demonstrated that Treponema are among the dominant microbial genera detected intracellularly in tumor specimens from patients with oral squamous cell carcinoma. While over 60 species and phylotypes of oral Treponema have been detected, T. denticola is one of the few that can be grown in culture and the only one in which genetic manipulation is regularly performed. Thus, T. denticola is a key model organism for studying spirochete metabolic processes, interactions with other microbes, and host cell and tissue responses relevant to oral diseases, as well as venereal and nonvenereal treponematoses whose agents lack workable genetic systems. We previously demonstrated improved transformation efficiency using an Escherichia coli-T. denticola shuttle plasmid and its utility for expression in T. denticola of an exogenous fluorescent protein that is active under anaerobic conditions. Here, we expand on this work by characterizing T. denticola Type I and Type II restriction-modification (R-M) systems and designing a high-efficiency R-M-silent "SyngenicDNA" shuttle plasmid resistant to all T. denticola ATCC 35405 R-M systems. Resequencing of the ATCC 33520 genome revealed an additional Type I R-M system consistent with the relatively low transformation efficiency of the shuttle plasmid in this strain. Using SyngenicDNA approaches, we optimized shuttle plasmid transformation efficiency in T. denticola and used it to complement a defined T. denticola ΔfhbB mutant strain. We further report the first high-efficiency transposon mutagenesis of T. denticola using an R-M-silent, codon-optimized, himarC9 transposase-based plasmid. Thus, use of SyngenicDNA-based strategies and tools can enable further mechanistic examinations of T. denticola physiology and behavior.

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缺乏限制性修饰靶基序的基于SyngenicDNA的质粒增强了齿密螺旋体的转化效率。
口腔螺旋体是一小群关键病原体之一,它们会导致组织稳态过程失调,从而导致牙周病中支撑牙齿的组织和骨骼破裂。此外,我们的研究小组最近证明,在口腔鳞状细胞癌患者的肿瘤标本中,密螺旋体是细胞内检测到的主要微生物属之一。虽然已经检测到60多种口腔密螺旋体和门型,但齿锥虫是少数可以在培养基中生长的细菌之一,也是唯一一种定期进行遗传操作的细菌。因此,齿锥虫是研究螺旋体代谢过程、与其他微生物的相互作用、与口腔疾病相关的宿主细胞和组织反应,以及缺乏可行遗传系统的性病和非性病密螺旋体病的关键模式生物。我们先前使用大肠杆菌-T证明了转化效率的提高。齿梭质粒及其在齿梭中表达在厌氧条件下具有活性的外源荧光蛋白的用途。在这里,我们通过表征齿锥虫I型和II型限制性修饰(R-M)系统并设计一种对所有齿锥虫ATCC 35405 R-M系统具有抗性的高效R-M沉默“SyngenicDNA”穿梭质粒来扩展这项工作。ATCC 33520基因组的再测序揭示了额外的I型R-M系统,该系统与该菌株中穿梭质粒的相对低的转化效率一致。利用SyngenicDNA方法,我们优化了齿锥虫的穿梭质粒转化效率,并将其用于补充已确定的齿锥虫ΔfhbB突变株。我们进一步报道了第一个使用R-M沉默的、密码子优化的、基于himarC9转座酶的质粒对齿锥菌进行高效转座子诱变。因此,使用基于SyngenicDNA的策略和工具可以对齿锥虫的生理和行为进行进一步的机制检查。
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来源期刊
Molecular Oral Microbiology
Molecular Oral Microbiology DENTISTRY, ORAL SURGERY & MEDICINE-MICROBIOLOGY
CiteScore
6.50
自引率
5.40%
发文量
46
审稿时长
>12 weeks
期刊介绍: Molecular Oral Microbiology publishes high quality research papers and reviews on fundamental or applied molecular studies of microorganisms of the oral cavity and respiratory tract, host-microbe interactions, cellular microbiology, molecular ecology, and immunological studies of oral and respiratory tract infections. Papers describing work in virology, or in immunology unrelated to microbial colonization or infection, will not be acceptable. Studies of the prevalence of organisms or of antimicrobials agents also are not within the scope of the journal. The journal does not publish Short Communications or Letters to the Editor. Molecular Oral Microbiology is published bimonthly.
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