Repurposing of Strychnine as the Potential Inhibitors of Aldo–keto Reductase Family 1 Members B1 and B10: Computational Modeling and Pharmacokinetic Analysis

IF 1.9 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY The Protein Journal Pub Date : 2023-11-08 DOI:10.1007/s10930-023-10163-z
Muhammad Sarfraz, Mubashir Aziz, Saira Afzal, Pervaiz Ali Channar, Bshra A. Alsfouk, Ghulam Abbas Kandhro, Sidra Hassan, Ahlam Sultan, Asad Hamad, Mosab Arafat, Muhammad Naeem Qaiser, Aftab Ahmed, Farhan Siddique, Syeda Abida Ejaz
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Abstract

AKR1B1 and AKR1B10 are important members of aldo–keto reductase family which plays a significant role in cancer progression by modulating cellular metabolism. These enzymes are involved in various metabolic processes, including the synthesis and metabolism of hormones, detoxification of reactive aldehydes, and the reduction of various endogenous and exogenous compounds. This study aimed to explore the potential of strychnine as an anticancer agent by targeting AKR1B1 and AKR1B10 via drug repurposing approach. To assess the drug-like properties of strychnine, a physiologically based pharmacokinetic (PKPB) model and High Throughput Pharmacokinetics (HTPK) approach were employed. The obtained results fell within the expected range for drug molecules, confirming its suitability for further investigation. Additionally, density functional theory (DFT) studies were conducted to gain insight into the electronic properties contributing to the drug molecule’s reactivity. Building upon the promising DFT results, molecular docking analysis using the AutoDock tool was performed to examine the binding interactions between strychnine and the proposed targets, AKR1B1 and AKR1B10. Findings from the molecular docking studies suggested a higher probability of strychnine acting as an inhibitor of AKR1B1 and AKR1B10 with docking scores of − 30.84 and − 29.36 kJ/mol respectively. To validate the stability of the protein–ligand complex, Molecular Dynamic Simulation (MDS) studies were conducted, revealing the formation of a stable complex between the enzymes and strychnine. This comprehensive approach sheds light on the potential effectiveness of strychnine as a treatment for breast, lung, liver, and pancreatic cancers, as well as related malignancies. The novel insights gained from the physiologically based pharmacokinetic modeling, density functional theory, molecular docking, and molecular dynamics simulations collectively support the prospect of strychnine as a promising molecule for anticancer therapy. Further investigations are warranted to validate these findings and explore the therapeutic potential of strychnine in preclinical and clinical settings.

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马钱子碱作为醛酮还原酶家族1成员B1和B10的潜在抑制剂的再利用:计算建模和药代动力学分析。
AKR1B1和AKR1B10是醛缩酮还原酶家族的重要成员,其通过调节细胞代谢在癌症进展中发挥重要作用。这些酶参与各种代谢过程,包括激素的合成和代谢、活性醛的解毒以及各种内源性和外源性化合物的减少。本研究旨在通过药物再利用方法靶向AKR1B1和AKR1B10,探索士的宁作为抗癌剂的潜力。为了评估士的宁的类药物性质,采用了基于生理学的药代动力学(PKPB)模型和高通量药代动力学方法。所获得的结果在药物分子的预期范围内,证实了其适合进一步研究。此外,还进行了密度泛函理论(DFT)研究,以深入了解有助于药物分子反应性的电子性质。基于有希望的DFT结果,使用AutoDock工具进行了分子对接分析,以检查士的宁与所提出的靶标AKR1B1和AKR1B10之间的结合相互作用。分子对接研究结果表明,士的宁作为AKR1B1和AKR1B10抑制剂的可能性更高,对接得分为- 30.84和- 分别为29.36kJ/mol。为了验证蛋白质-配体复合物的稳定性,进行了分子动力学模拟(MDS)研究,揭示了酶和士的宁之间形成稳定的复合物。这一综合方法揭示了士的宁治疗乳腺癌、肺癌、肝癌和胰腺癌以及相关恶性肿瘤的潜在有效性。从基于生理学的药代动力学建模、密度泛函理论、分子对接和分子动力学模拟中获得的新见解共同支持了士的宁作为一种有前景的抗癌分子的前景。需要进一步的研究来验证这些发现,并探索士的宁在临床前和临床环境中的治疗潜力。
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来源期刊
The Protein Journal
The Protein Journal 生物-生化与分子生物学
CiteScore
5.20
自引率
0.00%
发文量
57
审稿时长
12 months
期刊介绍: The Protein Journal (formerly the Journal of Protein Chemistry) publishes original research work on all aspects of proteins and peptides. These include studies concerned with covalent or three-dimensional structure determination (X-ray, NMR, cryoEM, EPR/ESR, optical methods, etc.), computational aspects of protein structure and function, protein folding and misfolding, assembly, genetics, evolution, proteomics, molecular biology, protein engineering, protein nanotechnology, protein purification and analysis and peptide synthesis, as well as the elucidation and interpretation of the molecular bases of biological activities of proteins and peptides. We accept original research papers, reviews, mini-reviews, hypotheses, opinion papers, and letters to the editor.
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