1H, 15N and 13C backbone and side chain solution NMR assignments of the TPM domain-containing protein of the thermophilic bacterium Rhodothermus marinus

IF 0.8 4区 生物学 Q4 BIOPHYSICS Biomolecular NMR Assignments Pub Date : 2023-08-05 DOI:10.1007/s12104-023-10146-2
Leonardo Pellizza, Lila Ramis, Ignacio Argañaraz Araoz, Martín Aran
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Abstract

The InterPro family IPR007621 TPM_phosphatase is a widely conserved family of protein domains found in prokaryotes, plants and invertebrates. Despite similar predicted protein folding, members of this family are involved in different cellular processes. In recent years, the structural and biochemical characterization of evolutionarily divergent TPM domains has shown their ability to hydrolyze phosphate groups of different substrates. However, there are still inaccurate functional annotations and uncertain relationships between the structure and function of this domain family. We here report the 1H, 13C, and 15N backbone and sidechain resonances of the TPM domain of a predicted TPM domain-containing protein of the thermophilic bacterium Rhodothermus marinus. These data will lay the groundwork for future NMR-based investigations, contributing to a thorough comprehension of the intricate aspects governing the interplay between structure and function of TPM domains. Additionally, they will unlock opportunities to explore dynamic structural changes, providing valuable insights into the molecular mechanisms underlying the evolutionary adaptations to extreme environmental conditions within this protein family.

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嗜热细菌Rhodothermus marinus的含TPM结构域蛋白质的1H、15N和13C主链和侧链溶液NMR归属
InterPro家族IPR007621 TPM_phosphate是一个广泛保守的蛋白质结构域家族,存在于原核生物、植物和无脊椎动物中。尽管预测的蛋白质折叠相似,但该家族的成员参与了不同的细胞过程。近年来,进化上不同的TPM结构域的结构和生化特征已经表明它们能够水解不同底物的磷酸基团。然而,该领域族的结构和功能之间仍然存在不准确的功能注释和不确定的关系。我们在此报道了嗜热细菌Rhodothermus marinus的预测的含TPM结构域蛋白质的TPM结构域的1H、13C和15N主链和侧链共振。这些数据将为未来基于NMR的研究奠定基础,有助于彻底理解TPM结构域的结构和功能之间相互作用的复杂方面。此外,它们将开启探索动态结构变化的机会,为该蛋白质家族中进化适应极端环境条件的分子机制提供有价值的见解。
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来源期刊
Biomolecular NMR Assignments
Biomolecular NMR Assignments 生物-光谱学
CiteScore
1.70
自引率
11.10%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Biomolecular NMR Assignments provides a forum for publishing sequence-specific resonance assignments for proteins and nucleic acids as Assignment Notes. Chemical shifts for NMR-active nuclei in macromolecules contain detailed information on molecular conformation and properties. Publication of resonance assignments in Biomolecular NMR Assignments ensures that these data are deposited into a public database at BioMagResBank (BMRB; http://www.bmrb.wisc.edu/), where they are available to other researchers. Coverage includes proteins and nucleic acids; Assignment Notes are processed for rapid online publication and are published in biannual online editions in June and December.
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