{"title":"Large-scale Hydrodynamic Brownian Simulations on Multicore and GPU Architectures","authors":"M. G. Lopez, Mitchel D. Horton, Edmond Chow","doi":"10.1145/2616498.2616523","DOIUrl":null,"url":null,"abstract":"We present here ongoing work to produce an implementation of Brownian dynamics simulation using a matrix-free method with hardware accelerators. This work describes the GPU acceleration of a smooth particle-mesh Ewald (SPME) algorithm which is used for the main part of the computation, previously ported to run on Intel Xeon Phi.","PeriodicalId":93364,"journal":{"name":"Proceedings of XSEDE16 : Diversity, Big Data, and Science at Scale : July 17-21, 2016, Intercontinental Miami Hotel, Miami, Florida, USA. Conference on Extreme Science and Engineering Discovery Environment (5th : 2016 : Miami, Fla.)","volume":"100 1","pages":"9:1-9:2"},"PeriodicalIF":0.0000,"publicationDate":"2014-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of XSEDE16 : Diversity, Big Data, and Science at Scale : July 17-21, 2016, Intercontinental Miami Hotel, Miami, Florida, USA. Conference on Extreme Science and Engineering Discovery Environment (5th : 2016 : Miami, Fla.)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/2616498.2616523","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
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Abstract

We present here ongoing work to produce an implementation of Brownian dynamics simulation using a matrix-free method with hardware accelerators. This work describes the GPU acceleration of a smooth particle-mesh Ewald (SPME) algorithm which is used for the main part of the computation, previously ported to run on Intel Xeon Phi.
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基于多核和GPU架构的大规模流体动力学布朗模拟
我们在这里介绍正在进行的工作,以产生一个实现布朗动力学模拟使用无矩阵的方法与硬件加速器。这项工作描述了平滑粒子网格Ewald (SPME)算法的GPU加速,该算法用于计算的主要部分,以前移植到Intel Xeon Phi上运行。
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