2009 Neurospora Bibliography

Abstract

This bibliography represents my attempt to collect all works dealing substantially with Neurospora. Please let me know of anything published in 2008 or 2009 that is not included here or in the previous bibliography, so that it might be mentioned next year. I would be especially happy to hear of chapters from books, and articles from journals not indexed in major bibliographic services. Please also let me know of any errors in citation. Please send reprints or copies of articles to the Fungal Genetics Stock Center. This bibliography is available in Fungal Genetics Reports: https://newprairiepress.org/fgr/vol56/iss1/5 2009 Neurospora Bibliography This bibliography represents my attempt to collect all works dealing substantially with Neurospora. Please let me know of anything published in 2008 or 2009 that is not included here or in the previous bibliography, so that it might be mentioned next year. I would be especially happy to hear of chapters from books, and articles from journals not indexed in major bibliographic services. Please also let me know of any errors in citation. Please send reprints or copies of articles to the Fungal Genetics Stock Center. Craig Wilson, 15236 Ashworth Ave. N., Shoreline WA 98133, USA (chwilso@gmail.com) Cross reference of author's names 1. Aanen, D.K., Debets, A.J.M., de Visser, J.A.G.M., and Hoekstra, R.F. 2008. The social evolution of somatic fusion. Bioessays 30:1193-1203. 2. Adhvaryu, K.K., and Selker, E.U. 2008. Protein phosphatase PP1 is required for normal DNA methylation in Neurospora. Genes Dev. 22:3391-3396. 3. Adio, S., and Woehlke, G. 2009. Properties of the Kinesin-3 NcKin3 motor domain and implications for neck function. FEBS J. 276:3641-3655. 4. Aiyar, R.S., Gagneur, J., and Steinmetz, L.M. 2008. Identification of mitochondrial disease genes through integrative analysis of multiple datasets. Methods 46:248-255. 5. Akman, O.E., Ciocchetta, F., Degasperi, A., and Guerriero, M.L. 2009. Modelling biological clocks with bio-pepa: stochasticity and robustness for the Neurospora crassa circadian network. Lect. Notes Bioinform. 5688:52-67. 6. Aldabbous, M. 2009. Isolation and characterization of Neurospora cell wall biosynthesis and anastomosisdefective mutants. Thesis (Ph.D.)--State University of New York at Buffalo, 176 p. 7. Aleman-Meza, B., Yu, Y.H., Schuttler, H.B., Arnold, J., and Taha, T.R. 2009. KINSOLVER: A simulator for computing large ensembles of biochemical and gene regulatory networks. Comput. Math. Appl. 57:420-435. 8. Aliyari, R., and Ding, S.W. 2009. RNA-based viral immunity initiated by the Dicer family of host immune receptors. Immunol. Rev. 227:176-188. 9. Allgaier, S., Taylor, R.D., Brudnaya, Y., Jacobson, D.J., Cambareri, E., and Stuart, W.D. 2009. Vaccine production in Neurospora crassa. Biologicals 37:128-132. 10. Allgaier, S., Weiland, N., Hamad, I., and Kempken, F. 2009. Expression of ribonuclease A and ribonuclease N(1) in the filamentous fungus Neurospora crassa. Appl. Microbiol. Biotechnol. doi:10.1007/s00253-009-2161-y 11. Allis, C.D., Jenuwein, T., Reinberg, D., and Caparros, M.-L. 2009. Epigenetics. Cold Spring Harbor, N.Y.: CSH Press/Cold Spring Harbor Laboratory Press. x, 502 p. 12. Angarita-Jaimes, N.C., Roca, M.G., Towers, C.E., Read, N.D., and Towers, D.P. 2009. Algorithms for the automated analysis of cellular dynamics within living fungal colonies. Cytometry A 75:768-780. 13. Araujo-Palomares, C.L., Riquelme, M., and Castro-Longoria, E. 2009. The polarisome component SPA-2 localizes at the apex of Neurospora crassa and partially colocalizes with the Spitzenkorper. Fungal Genet. Biol. 46:551-563. 14. Arnett, D.R., Lorimer, H.E., and Asch, D.K. 2009. Catabolite repression directly affects transcription of the qa-y gene of Neurospora crassa. Fungal Genet. Biol. 46:377-380. 1 Wilson: 2009 Neurospora Bibliography Published by New Prairie Press, 2017 15. Bahn, Y.-S. 2008. Master and commander in fungal pathogens: the two-component system and the HOG signaling pathway. Eukaryotic Cell 7:2017-2036. 16. Baird, N.A., Etter, P.D., Atwood, T.S., Currey, M.C., Shiver, A.L., Lewis, Z.A., Selker, E.U., Cresko, W.A., and Johnson, E.A. 2008. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376. 17. Baker, C.L., Kettenbach, A.N., Loros, J.J., Gerber, S.A., and Dunlap, J.C. 2009. Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock. Mol. Cell 34:354363. 18. Basile, L.J. 2008. Cyanide-degrading enzymes for bioremediation. Thesis (M.S.)--Texas A&M University. ix, 43 p. 19. Bastian, F., Bouziri, L., Nicolardot, B., and Ranjard, L. 2009. Impact of wheat straw decomposition on successional patterns of soil microbial community structure. Soil Biol. Biochem. 41:262-275. 20. Bay, D.C., O'Neil, J.D., and Court, D.A. 2008. The influence of sterols on the conformation of recombinant mitochondrial porin in detergent. Biochem. Cell Biol. 86:539-545. 21. Becker, T., Gebert, M., Pfanner, N., and van der Laan, M. 2009. Biogenesis of mitochondrial membrane proteins. Curr. Opin. Cell Biol. 21:484-493. 22. Bell-Pedersen, D., and Borkovich, K.A. 2009. The 2009 George W. Beadle Award: Jay C. Dunlap. Genetics 181:831-833. 23. Bogdanovic, O., and Veenstra, G.J.C. 2009. DNA methylation and methyl-CpG binding proteins: developmental requirements and function. Chromosoma 118:549-565. 24. Bonito, G., Isikhuemhen, O.S., and Vilgalys, R. Identification of fungi associated with municipal compost using DNA-based techniques. Bioresour. Technol. 101:1021-1027. 25. Bowman, B.J., Draskovic, M., Freitag, M., and Bowman, E.J. 2009. Structure and distribution of organelles and cellular location of calcium transporters in Neurospora crassa. Eukaryotic Cell. doi:10.1128/EC.00174-09 26. Brody, S., Oelhafen, K., Schneider, K., Perrino, S., Goetz, A., Wang, C., and English, C. 2009. Circadian rhythms in Neurospora crassa: downstream effectors. Fungal Genet. Biol. doi:10.1016/j.fgb.2009.09.006 27. Bushley, K.E., Ripoll, D.R., and Turgeon, B.G. 2008. Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis. BMC Evol. Biol. 8:328. 28. Carvalho, M.B., Martins, I., Leitao, M.C., Garcia, H., Rodrigues, C., San Romao, V., McLellan, I., Hursthouse, A., and Silva Pereira, C. 2009. Screening pentachlorophenol degradation ability by environmental fungal strains belonging to the phyla Ascomycota and Zygomycota. J. Ind. Microbiol. Biotechnol. 36:1249-1256. 29. Cecere, G., and Cogoni, C. 2009. Quelling targets the rDNA locus and functions in rDNA copy number control. BMC Microbiol. 9:44. 30. Cha, J., Chang, S.S., Huang, G., Cheng, P., and Liu, Y. 2008. Control of WHITE COLLAR localization by phosphorylation is a critical step in the circadian negative feedback process. EMBO J. 27:3246-3255. 31. Chadee, A.B., Bhaskaran, H., and Russell, R. 2009. Protein roles in group I intron RNA folding: The tyrosyl-tRNA synthetase CYT-18 stabilizes the native state relative to a long-lived misfolded structure without compromising folding kinetics. J. Mol. Biol. doi:10.1016/j.jmb.2009.11.009 32. Chae, M.S. 2008. Examination of alternative oxidase induction in Neurospora crassa. Thesis (Ph.D.)--University of Alberta. 92 p. 33. Chae, M.S., and Nargang, F.E. 2009. Investigation of regulatory factors required for alternative oxidase production in Neurospora crassa. Physiol. Plant. 137:407-418 2 Fungal Genetics Reports, Vol. 56 [2009], Art. 5 https://newprairiepress.org/fgr/vol56/iss1/5 DOI: 10.4148/1941-4765.1078 34. Chen, E.H. 2008. Cell fusion : overviews and methods. Totowa, N.J.: Humana. xi, 421 p. 35. Chen, C.H., and Loros, J.J. 2009. Neurospora sees the light: Light signaling components in a model system. Commun. Integr. Biol. 2:448-451. 36. Chen, C.H., Ringelberg, C.S., Gross, R.H., Dunlap, J.C., and Loros, J.J. 2009. Genome-wide analysis of lightinducible responses reveals hierarchical light signalling in Neurospora. EMBO J. 28:1029-1042. 37. Clark, T.A., J.M. Guilmette, D. Renstrom, and J.P. Townsend. 2008. RNA extraction, probe preparation, and competitive hybridization for transcriptional profiling using Neurospora crassa long-oligomer DNA microarrays. Fungal Genet. Reports 55:18-28 38. Colombini, M. 2009. The published 3D structure of the VDAC channel: native or not? Trends Biochem. Sci. 34:382-389. 39. da Silva, C.C., Cruz, R.C., Bucciarelli-Rodriguez, M., and Vilas-Boas, A. 2009. Neurospora crassa mat A-2 and mat A-3 proteins weakly interact in the yeast two-hybrid system and affect yeast growth. Genet. Mol. Biol. 32:354-361. 40. de Almeida, F.M., Bonini, B.M., Beton, D., Jorge, J.A., Terenzi, H.F., and da Silva, A.M. 2009. Heterologous expression in Escherichia coli of Neurospora crassa neutral trehalase as an active enzyme. Protein Expr. Purif. 65:185-189. 41. Del Campo, M., Mohr, S., Jiang, Y., Jia, H., Jankowsky, E., and Lambowitz, A.M. 2009. Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones. J. Mol. Biol. 389:674-693. 42. Dent, K.C., Weber, B.W., Benedik, M.J., and Sewell, B.T. 2009. The cyanide hydratase from Neurospora crassa forms a helix which has a dimeric repeat. Appl. Microbiol. Biotechnol. 82:271-278. 43. Dettman, J.R., Anderson, J.B., and Kohn, L.M. 2009. Genome-wide investigation of reproductive isolation in experimental lineages and natural species of Neurospora: identifying candidate regions by microarray-based genotyping and mapping. Evolution. doi:10.1111/j.1558-5646.2009.00863.x 44. Diaz, A., Valdes, V.J., Rudino-Pinera, E., Horjales, E., and Hansberg, W. 2009. Structure-function relationships in fungal large-subunit catalases. J. Mol. Biol. 386:218-232. 45. Diernfellner, A.C., Querfurth, C., Salazar, C., Hofer, T., and Brunner, M. 2009. Phosphorylation modulates rapid nucleocytoplasmic shuttling and cytoplasmic accumulation of Neurospora clock protein FRQ on a circadian t