QSAR study of antituberculosis activity of oxadiazole derivatives using DFT calculations

IF 2.6 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Receptors and Signal Transduction Pub Date : 2022-03-09 DOI:10.1080/10799893.2022.2044860
S. Hosseini, S. Ketabi, Golnar Hasheminasab
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引用次数: 4

Abstract

Abstract Mycobacterium tuberculosis (Mtb) is the causative agent of infectious diseases worldwide. Oxadiazole derivatives have many biological activities and can be a good alternative to antimicrobial drugs. In this study, the quantitative structure–activity relationship (QSAR) of fifty-one novel oxadiazoles derivatives has been studied using the density functional theory (DFT) and statistical methods. Becke’s three-parameter hybrid method and the Lee-Yang-Parr B3LYP functional employing 6–31++G (d) basis set are used to calculated quantum chemical descriptors using Gaussian09 software. The other descriptors including Lipinski, physicochemistry, topological, etc. were calculated using Chembio3d software. Statistically, the best correlation between the independent variables and the PMIC as the dependent variable was a 6-variable equation for which the correlation coefficient were as follows R 2 = 0.86 and R = 0.93. Also, the values of MAE = 0.003 and Q 2 CV = 0.9 confirm the acceptability of the obtained model. The obtained equation shows that NRB, energy gap (ΔE), Henry’s law constant, O–C, and C–N bonds length, and the Free Gibbs energy have the highest correlation with the anti-Tb activity.
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用DFT计算恶二唑衍生物抗结核活性的QSAR研究
摘要结核分枝杆菌(Mycobacterium tuberculosis, Mtb)是世界范围内主要的传染病病原体。恶二唑衍生物具有多种生物活性,可作为抗菌药物的良好替代品。本文利用密度泛函理论(DFT)和统计方法研究了51种新型恶二唑衍生物的定量构效关系。采用Becke的三参数混合方法和采用6-31 ++G (d)基集的Lee-Yang-Parr B3LYP泛函数,利用Gaussian09软件计算量子化学描述子。其他描述符包括Lipinski、物理化学、拓扑等使用Chembio3d软件计算。统计上,自变量与作为因变量的PMIC之间的最佳相关性为6变量方程,相关系数分别为r2 = 0.86和R = 0.93。MAE = 0.003, q2 CV = 0.9,证实了所得模型的可接受性。得到的方程表明,NRB、能隙(ΔE)、亨利定律常数、O-C键和C-N键长度以及自由吉布斯能与抗结核活性的相关性最高。
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来源期刊
Journal of Receptors and Signal Transduction
Journal of Receptors and Signal Transduction 生物-生化与分子生物学
CiteScore
6.60
自引率
0.00%
发文量
19
审稿时长
>12 weeks
期刊介绍: Journal of Receptors and Signal Tranduction is included in the following abstracting and indexing services: BIOBASE; Biochemistry and Biophysics Citation Index; Biological Abstracts; BIOSIS Full Coverage Shared; BIOSIS Previews; Biotechnology Abstracts; Current Contents/Life Sciences; Derwent Chimera; Derwent Drug File; EMBASE; EMBIOLOGY; Journal Citation Reports/ Science Edition; PubMed/MedLine; Science Citation Index; SciSearch; SCOPUS; SIIC.
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