Deniz Mihcioglu, Erkan Elihan, Alper Aytekin, T. Gurer
{"title":"miR-564 and miR-718 expressions are downregulated in colorectal cancer tissues","authors":"Deniz Mihcioglu, Erkan Elihan, Alper Aytekin, T. Gurer","doi":"10.1515/tjb-2023-0015","DOIUrl":null,"url":null,"abstract":"Abstract Objectives MicroRNAs (miRNAs) are small RNAs that are involved in regulating gene expression and have an important role in biological pathways such as differentiation, migration, cell proliferation, and other cellular processes. Previous studies have shown that miR-564 and miR-718 are either downregulated or upregulated in various cancers. The purpose of this study was to examine the levels of expression of miR-564 and miR-718 in colorectal cancer (CRC) patients’ tumor and non-tumor tissues. Methods The study group consisted of tumor and non-tumor tissues obtained from a total of 80 CRC patients. The expression levels of miRNAs were determined using quantitative Real-Time Polymerase Chain Reaction (RT-qPCR). Additionally, using bioinformatics analysis, the transcription factors (TFs) that are associated with miR-564 and miR-718 were identified as well as the GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment pathway analysis of these miRNAs. Results According to the findings of RT-qPCR, both miR-564 and miR-718 expression levels were significantly downregulated in CRC (p<0.001). There was a statistically significant correlation between the expression levels of miR-564 and miR-718 (p=0.006). Both miR-564 and miR-718 regulated TFs including E2F1, HIFIA, BRD4, KDM2B, ESR1, MYC, PHF8, RUNX1, TCF12 and YY1. According to KEGG analysis, miR-564 and miR-718 were associated with Hippo and FoxO signaling pathways, respectively (p<0.05). Conclusions miR-564 and miR-718 may have function as tumor suppressors and may be biomarkers for the diagnosis of CRC.","PeriodicalId":23344,"journal":{"name":"Turkish Journal of Biochemistry","volume":"19 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Turkish Journal of Biochemistry","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1515/tjb-2023-0015","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Abstract Objectives MicroRNAs (miRNAs) are small RNAs that are involved in regulating gene expression and have an important role in biological pathways such as differentiation, migration, cell proliferation, and other cellular processes. Previous studies have shown that miR-564 and miR-718 are either downregulated or upregulated in various cancers. The purpose of this study was to examine the levels of expression of miR-564 and miR-718 in colorectal cancer (CRC) patients’ tumor and non-tumor tissues. Methods The study group consisted of tumor and non-tumor tissues obtained from a total of 80 CRC patients. The expression levels of miRNAs were determined using quantitative Real-Time Polymerase Chain Reaction (RT-qPCR). Additionally, using bioinformatics analysis, the transcription factors (TFs) that are associated with miR-564 and miR-718 were identified as well as the GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes) enrichment pathway analysis of these miRNAs. Results According to the findings of RT-qPCR, both miR-564 and miR-718 expression levels were significantly downregulated in CRC (p<0.001). There was a statistically significant correlation between the expression levels of miR-564 and miR-718 (p=0.006). Both miR-564 and miR-718 regulated TFs including E2F1, HIFIA, BRD4, KDM2B, ESR1, MYC, PHF8, RUNX1, TCF12 and YY1. According to KEGG analysis, miR-564 and miR-718 were associated with Hippo and FoxO signaling pathways, respectively (p<0.05). Conclusions miR-564 and miR-718 may have function as tumor suppressors and may be biomarkers for the diagnosis of CRC.
MicroRNAs (miRNAs)是一种参与调控基因表达的小rna,在分化、迁移、细胞增殖等生物通路中发挥重要作用。先前的研究表明,miR-564和miR-718在多种癌症中或下调或上调。本研究的目的是检测miR-564和miR-718在结直肠癌(CRC)患者肿瘤和非肿瘤组织中的表达水平。方法研究组包括80例结直肠癌患者的肿瘤组织和非肿瘤组织。采用实时荧光定量聚合酶链反应(RT-qPCR)检测mirna的表达水平。此外,利用生物信息学分析,鉴定了与miR-564和miR-718相关的转录因子(tf),以及这些mirna的GO (Gene Ontology)和KEGG (Kyoto Encyclopedia of Genes and Genomes)富集途径分析。结果RT-qPCR结果显示,miR-564和miR-718在结直肠癌中表达水平均显著下调(p<0.001)。miR-564与miR-718的表达水平有统计学意义(p=0.006)。miR-564和miR-718均可调控TFs,包括E2F1、HIFIA、BRD4、KDM2B、ESR1、MYC、PHF8、RUNX1、TCF12和YY1。经KEGG分析,miR-564和miR-718分别与Hippo和FoxO信号通路相关(p<0.05)。结论miR-564和miR-718可能具有肿瘤抑制功能,可能是CRC诊断的生物标志物。