Abstraction of biochemical reaction systems on polytopes

3区 工程技术 Q1 Materials Science Journal of Polymer Science. Part B, Polymer Physics Pub Date : 2011-01-01 DOI:10.3182/20110828-6-IT-1002.03317
P. Collins, L.C.G.J.M. Habets, Schuppen van Jh, Ismael Cerna, J. Fabriková, David Šafránek
{"title":"Abstraction of biochemical reaction systems on polytopes","authors":"P. Collins, L.C.G.J.M. Habets, Schuppen van Jh, Ismael Cerna, J. Fabriková, David Šafránek","doi":"10.3182/20110828-6-IT-1002.03317","DOIUrl":null,"url":null,"abstract":"Analysis of the dynamic behavior of large-scale biochemical reaction systems can be facilitated by abstraction followed by model checking. A biochemical reaction system can be approximated by a multi-affine system or an affine system on a rectangle. Either of these systems can be abstracted to an automaton. Model checking can then be employed to determine whether the dynamic behavior of the automaton satisfies specific properties. A relation between the system and its abstraction is proved; it is an over-approximation: any discrete state trajectory of the abstraction of the continuous state trajectory is contained in the automaton but the automaton may contain more behavior.","PeriodicalId":16853,"journal":{"name":"Journal of Polymer Science. Part B, Polymer Physics","volume":"30 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2011-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"13","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Polymer Science. Part B, Polymer Physics","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.3182/20110828-6-IT-1002.03317","RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Materials Science","Score":null,"Total":0}
引用次数: 13

Abstract

Analysis of the dynamic behavior of large-scale biochemical reaction systems can be facilitated by abstraction followed by model checking. A biochemical reaction system can be approximated by a multi-affine system or an affine system on a rectangle. Either of these systems can be abstracted to an automaton. Model checking can then be employed to determine whether the dynamic behavior of the automaton satisfies specific properties. A relation between the system and its abstraction is proved; it is an over-approximation: any discrete state trajectory of the abstraction of the continuous state trajectory is contained in the automaton but the automaton may contain more behavior.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
多构体上生化反应体系的抽象
对大规模生化反应系统的动态行为进行分析可以通过抽象和模型检验来实现。生化反应系统可以用多仿射系统或矩形上的仿射系统来近似。这两种系统都可以抽象为自动机。然后可以使用模型检查来确定自动机的动态行为是否满足特定的属性。证明了系统及其抽象之间的关系;这是一种过度逼近:连续状态轨迹抽象的任何离散状态轨迹都包含在自动机中,但自动机可能包含更多的行为。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
5.90
自引率
0.00%
发文量
0
审稿时长
2.1 months
期刊介绍: Since its launch in 1946 by P. M. Doty, H. Mark, and C.C. Price, the Journal of Polymer Science has provided a continuous forum for the dissemination of thoroughly peer-reviewed, fundamental, international research into the preparation and properties of macromolecules. From January 2020, the Journal of Polymer Science, Part A: Polymer Chemistry and Journal of Polymer Science, Part B: Polymer Physics will be published as one journal, the Journal of Polymer Science. The merged journal will reflect the nature of today''s polymer science research, with physics and chemistry of polymer systems at the heart of the scope. You can continue looking forward to an exciting mix of comprehensive reviews, visionary insights, high-impact communications, and full papers that represent the rapid multidisciplinary developments in polymer science. Our editorial team consists of a mix of well-known academic editors and full-time professional editors who ensure fast, professional peer review of your contribution. After publication, our team will work to ensure that your paper receives the recognition it deserves by your peers and the broader scientific community.
期刊最新文献
Quantitative Image Analysis of Fractal‐Like Thin Films of Organic Semiconductors Polymer Physics: A Molecular Approach Abstraction of biochemical reaction systems on polytopes Nonlocal electron-phonon coupling. Influence on the nature of polarons [refereed] Nanocomposites of polyurethane with various organoclays: Thermomechanical properties, morphology, and gas permeability* This paper is dedicated to Prof. Jung Il Jin of Korea University, Seoul Korea, on the occasion of his 60th birthday.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1