Phylogenetic analysis of Luciobarbus Heckel, 1843 and Barbus Cuvier & Cloquet, 1816 species in the Euphrates River (Turkey) based on mtDNA COI gene sequences

IF 1.4 Q3 MARINE & FRESHWATER BIOLOGY International Aquatic Research Pub Date : 2022-01-01 DOI:10.3153/ar22012
A. Parmaksız, Elif Korkmaz, Dilara Ulusal, N. Doğan
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引用次数: 3

Abstract

Natural fish species living in the Euphrates River System; It is subject to some pressures such as overfishing, competition with invasive species and habitat loss. As a result of these pressures, it leads to the decrease of endemic and native species. At the beginning of these species are the species belonging to the Barbus Cuvier & Cloquet, 1816 and Luciobarbus Heckel, 1843 genera, which have high economic importance. In this study, phylogenetic analysis of the species belonging to the genus Barbus Cuvier & Cloquet, 1816 and Luciobarbus Heckel, 1843, which live naturally in the Euphrates River, was carried out with mtDNA COI gene sequences. 17 fish samples belonging to five species from three localities belonging to the Euphrates river system (Turkey) were studied. Total DNA extraction was performed from muscle tissue using Commercial Kit. Then the mtDNA COI region was amplified by PCR and sequenced. Genetic distance values were calculated between 0.00201 and 0.15332, and it was determined that the closest species were L. xanthopterus and L. esocinus, and the most distant species were B. lacerta and A. grypus. In addition, phylogenetic analyzes of the target species were made and an phylogenetic tree was formed and the species were distinguished. In future studies, it is recommended to evaluate the data in this study, to determine the genetic characteristics of populations, and to carry out conservation studies at the population level.
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基于mtDNA COI基因序列的土耳其幼发拉底河Luciobarbus Heckel, 1843和Barbus Cuvier & Cloquet, 1816种系统发育分析
幼发拉底河水系的天然鱼类它受到一些压力,如过度捕捞,与入侵物种的竞争和栖息地的丧失。由于这些压力,它导致地方性和本地物种的减少。这些种的开头是Barbus Cuvier & Cloquet属(1816)和Luciobarbus Heckel属(1843),具有很高的经济价值。本研究利用mtDNA COI基因序列对幼发拉底河自然生长的Barbus Cuvier & Cloquet属(1816)和Luciobarbus Heckel属(1843)进行了系统发育分析。对幼发拉底河水系(土耳其)3个地点的5种17种鱼类进行了研究。使用商业试剂盒从肌肉组织中提取总DNA。然后用PCR扩增mtDNA COI区并测序。遗传距离在0.00201 ~ 0.15332之间,确定距离最近的种是L. xanthopterus和L. esocinus,距离最远的种是B. lacerta和A. grypus。此外,对目标种进行了系统发育分析,建立了系统发育树,并对目标种进行了区分。在今后的研究中,建议对本研究的数据进行评价,确定种群的遗传特征,并在种群水平上开展保护研究。
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来源期刊
International Aquatic Research
International Aquatic Research MARINE & FRESHWATER BIOLOGY-
CiteScore
2.40
自引率
7.70%
发文量
0
审稿时长
12 weeks
期刊介绍: The journal (IAR) is an international journal that publishes original research articles, short communications, and review articles in a broad range of areas relevant to all aspects of aquatic sciences (freshwater and marine). The Journal specifically strives to increase the knowledge of most aspects of applied researches in both cultivated and wild aquatic animals in the world. The journal is fully sponsored, which means it is free of charge for authors. The journal operates a single-blind peer review process. The main research areas in aquatic sciences include: -Aquaculture- Ecology- Food science and technology- Molecular biology- Nutrition- Physiology- Water quality- Climate Change
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