{"title":"Comparison of the efficacy of two phenotypic identification kits and classic PCR methods to identify Aeromonas hydrophila isolated from fish farms","authors":"Şerafettin Balcı, Z. Ipek, A. Er, Ş. Kayış","doi":"10.3153/ar23013","DOIUrl":null,"url":null,"abstract":"In recent years, phenotypic identification kits have been reported to give incorrect results in identifying Aeromonas species, whereas molecular identification is quite reliable. In this context, Aeromonas hydrophila strains, isolated from fish farms (9 strains), identified by polymerase chain reaction (PCR) method, and ATCC strain bacteria were used in the present study for the determination of the usability of API 20NE and Microgen GN-ID A + B panel test kits. All strains were determined as A. hydrophila in molecular methods. After phenotypic identification, a 100% accuracy rate was obtained for A. hydrophila with API 20NE. In the Microgen GN-ID A + B, these rates were 60% for the strains used in this study. Phenotypic identification for the ATCC strain in both kits was correct. This study showed that the API 20NE test kit had high validation for the rapid and correct identification of fish pathogenic A. hydrophila.","PeriodicalId":13619,"journal":{"name":"International Aquatic Research","volume":"32 1","pages":""},"PeriodicalIF":1.4000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"International Aquatic Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3153/ar23013","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MARINE & FRESHWATER BIOLOGY","Score":null,"Total":0}
引用次数: 0
Abstract
In recent years, phenotypic identification kits have been reported to give incorrect results in identifying Aeromonas species, whereas molecular identification is quite reliable. In this context, Aeromonas hydrophila strains, isolated from fish farms (9 strains), identified by polymerase chain reaction (PCR) method, and ATCC strain bacteria were used in the present study for the determination of the usability of API 20NE and Microgen GN-ID A + B panel test kits. All strains were determined as A. hydrophila in molecular methods. After phenotypic identification, a 100% accuracy rate was obtained for A. hydrophila with API 20NE. In the Microgen GN-ID A + B, these rates were 60% for the strains used in this study. Phenotypic identification for the ATCC strain in both kits was correct. This study showed that the API 20NE test kit had high validation for the rapid and correct identification of fish pathogenic A. hydrophila.
期刊介绍:
The journal (IAR) is an international journal that publishes original research articles, short communications, and review articles in a broad range of areas relevant to all aspects of aquatic sciences (freshwater and marine). The Journal specifically strives to increase the knowledge of most aspects of applied researches in both cultivated and wild aquatic animals in the world. The journal is fully sponsored, which means it is free of charge for authors. The journal operates a single-blind peer review process. The main research areas in aquatic sciences include: -Aquaculture- Ecology- Food science and technology- Molecular biology- Nutrition- Physiology- Water quality- Climate Change