{"title":"AI assisted encryption into DNA sequence of a functional protein","authors":"Tom Ruvio, Connor J. Grady, Alexander R Bricco, A. Gilad","doi":"10.1145/3411295.3411316","DOIUrl":null,"url":null,"abstract":"For thousands of years, a war has been waged between hackers and cryptographers1. Cryptographers find a safe way to store and transport information, and hackers attempt to access it. Today, this war is waged on a much more microscopic scale, and as new storage methods, like ones utilizing DNA are developed, cryptographers need to find a way to protect the data from malicious entities1,2. A solution may lie in the thousands of proteins in the human cell and attaching information onto these proteins while preserving their function. Even though there are encryption schemes that managed to insert information onto DNA a reliable approach to consistently preserve the function of the protein, and hence the viability of the cells transporting the information is necessary2,3. As a result, the motivation of this study was to devise a way to efficiently hide a message in living cells that cannot be discovered without DNA sequencing. We utilized these proteins, coupled with this Artificial Intelligence (AI) centered approach, to devise a standard scheme where one could reliably encode encrypted information onto these functional proteins. On the basis of repeated predictability modeling, and wet lab generations of the model system, Enhance Green Fluorescent Protein (EGFP). Our group attempted to develop a program capable of reliably encrypting information onto a protein of interest, EGFP, based on a desired degree of functionality and the amount of information needed to be encrypted. The encryption done was based on the Advanced Encryption standard (AES), the golden standard of encryption established by the U.S. National Institute of Standards and Technology (NIST)4. This scheme, similar to the work done centuries ago, contributes to the added security and applicability of novel data storage and information transfer methods in the field of synthetic biology.","PeriodicalId":93611,"journal":{"name":"Proceedings of the 7th ACM International Conference on Nanoscale Computing and Communication : Virtual Conference, September 23-25, 2020 : NanoCom 2020. ACM International Conference on Nanoscale Computing and Communication (7th : 2020 :...","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the 7th ACM International Conference on Nanoscale Computing and Communication : Virtual Conference, September 23-25, 2020 : NanoCom 2020. ACM International Conference on Nanoscale Computing and Communication (7th : 2020 :...","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/3411295.3411316","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
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Abstract

For thousands of years, a war has been waged between hackers and cryptographers1. Cryptographers find a safe way to store and transport information, and hackers attempt to access it. Today, this war is waged on a much more microscopic scale, and as new storage methods, like ones utilizing DNA are developed, cryptographers need to find a way to protect the data from malicious entities1,2. A solution may lie in the thousands of proteins in the human cell and attaching information onto these proteins while preserving their function. Even though there are encryption schemes that managed to insert information onto DNA a reliable approach to consistently preserve the function of the protein, and hence the viability of the cells transporting the information is necessary2,3. As a result, the motivation of this study was to devise a way to efficiently hide a message in living cells that cannot be discovered without DNA sequencing. We utilized these proteins, coupled with this Artificial Intelligence (AI) centered approach, to devise a standard scheme where one could reliably encode encrypted information onto these functional proteins. On the basis of repeated predictability modeling, and wet lab generations of the model system, Enhance Green Fluorescent Protein (EGFP). Our group attempted to develop a program capable of reliably encrypting information onto a protein of interest, EGFP, based on a desired degree of functionality and the amount of information needed to be encrypted. The encryption done was based on the Advanced Encryption standard (AES), the golden standard of encryption established by the U.S. National Institute of Standards and Technology (NIST)4. This scheme, similar to the work done centuries ago, contributes to the added security and applicability of novel data storage and information transfer methods in the field of synthetic biology.
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人工智能辅助加密进入一个功能蛋白的DNA序列
几千年来,黑客和密码学家之间一直在进行一场战争。密码学家找到了一种安全的方式来存储和传输信息,而黑客则试图访问它。今天,这场战争是在更微观的规模上进行的,随着新的存储方法的发展,比如利用DNA的存储方法,密码学家需要找到一种方法来保护数据免受恶意实体的攻击1,2。解决方案可能在于人类细胞中的数千种蛋白质,并将信息附加到这些蛋白质上,同时保持它们的功能。尽管有一些加密方案可以成功地将信息插入DNA,但一种可靠的方法可以始终如一地保持蛋白质的功能,因此细胞传输信息的可行性是必要的2,3。因此,这项研究的动机是设计一种方法来有效地隐藏活细胞中的信息,这些信息如果没有DNA测序就无法发现。我们利用这些蛋白质,再加上这种以人工智能(AI)为中心的方法,设计了一种标准方案,可以可靠地将加密信息编码到这些功能蛋白质上。在重复可预测性建模和湿实验室模型系统的基础上,增强绿色荧光蛋白(EGFP)。我们的团队试图开发一种程序,能够根据所需的功能程度和需要加密的信息量,将信息可靠地加密到感兴趣的蛋白质EGFP上。完成的加密基于高级加密标准(AES),这是由美国国家标准与技术研究所(NIST)建立的加密的黄金标准4。这个方案,类似于几个世纪前完成的工作,有助于在合成生物学领域增加新的数据存储和信息传输方法的安全性和适用性。
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