Crystal diffraction prediction and partiality estimation using Gaussian basis functions.

IF 1.9 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Acta Crystallographica Section A: Foundations and Advances Pub Date : 2023-03-01 DOI:10.1107/S2053273323000682
Wolfgang Brehm, Thomas White, Henry N Chapman
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引用次数: 1

Abstract

The recent diversification of macromolecular crystallographic experiments including the use of pink beams, convergent electron diffraction and serial snapshot crystallography has shown the limitations of using the Laue equations for diffraction prediction. This article gives a computationally efficient way of calculating approximate crystal diffraction patterns given varying distributions of the incoming beam, crystal shapes and other potentially hidden parameters. This approach models each pixel of a diffraction pattern and improves data processing of integrated peak intensities by enabling the correction of partially recorded reflections. The fundamental idea is to express the distributions as weighted sums of Gaussian functions. The approach is demonstrated on serial femtosecond crystallography data sets, showing a significant decrease in the required number of patterns to refine a structure to a given error.

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基于高斯基函数的晶体衍射预测和偏心估计。
近年来大分子晶体学实验的多样化,包括使用粉红色光束、会聚电子衍射和连续快照晶体学,显示了使用劳厄方程进行衍射预测的局限性。本文给出了在入射光束分布、晶体形状和其他潜在隐藏参数变化的情况下,计算晶体近似衍射图的有效方法。该方法对衍射图案的每个像素进行建模,并通过校正部分记录的反射来改进集成峰强度的数据处理。基本思想是将分布表示为高斯函数的加权和。该方法在连续飞秒晶体学数据集上进行了演示,显示出将结构细化到给定误差所需的模式数量显着减少。
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来源期刊
Acta Crystallographica Section A: Foundations and Advances
Acta Crystallographica Section A: Foundations and Advances CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
2.60
自引率
11.10%
发文量
419
期刊介绍: Acta Crystallographica Section A: Foundations and Advances publishes articles reporting advances in the theory and practice of all areas of crystallography in the broadest sense. As well as traditional crystallography, this includes nanocrystals, metacrystals, amorphous materials, quasicrystals, synchrotron and XFEL studies, coherent scattering, diffraction imaging, time-resolved studies and the structure of strain and defects in materials. The journal has two parts, a rapid-publication Advances section and the traditional Foundations section. Articles for the Advances section are of particularly high value and impact. They receive expedited treatment and may be highlighted by an accompanying scientific commentary article and a press release. Further details are given in the November 2013 Editorial. The central themes of the journal are, on the one hand, experimental and theoretical studies of the properties and arrangements of atoms, ions and molecules in condensed matter, periodic, quasiperiodic or amorphous, ideal or real, and, on the other, the theoretical and experimental aspects of the various methods to determine these properties and arrangements.
期刊最新文献
Instrumental broadening and the radial pair distribution function with 2D detectors. Superstructure reflections in tilted perovskites. On uniform edge-n-colorings of tilings. Indexing neutron transmission spectra of a rotating crystal. Dieter Schwarzenbach (1936-2024).
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