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Digital distance in the kisrhombille grid with the edge neighborhood. 数字距离在kisrhombille网格中具有边缘邻域。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-10-10 DOI: 10.1107/S2053273325008095
Fatma Kablan, Benedek Nagy, Béla Vizvári

The kisrhombille tiling is the dual tessellation of one of the semi-regular tilings, composed of right-angled triangles arranged in 12 distinct orientations. A coordinate system has been employed to formally describe the grid of tiles. In this paper, two tiles are defined as neighbors if they share an edge in their boundary. The concept of digital distance is introduced as the minimum number of steps required to traverse between two tiles, and the corresponding distance formula is derived by constructing minimal paths.

kisrhombille瓷砖是一种半规则瓷砖的双重镶嵌,由排列在12个不同方向的直角三角形组成。一个坐标系统被用来形式化地描述瓦片网格。在本文中,如果两个瓷砖在其边界上共享一条边,则将其定义为邻居。引入数字距离的概念,将其作为两个瓦片之间穿行所需的最小步数,并通过构造最小路径推导出相应的距离公式。
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引用次数: 0
Ultrathin selenium nanorods from helical phases: a quantum chemical study using line group theory. 来自螺旋相的超薄硒纳米棒:使用线群理论的量子化学研究。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-10-30 DOI: 10.1107/S2053273325009088
Vitaly V Porsev, Andrei V Bandura, Dmitry D Kuruch, Robert A Evarestov

Quantum chemical calculations of ultrathin nanorods cut from two bulk selenium phases were performed. Two sets of nanorods with trigonal and hexagonal geometric shapes described by the rod symmetry groups p31 and p3121, respectively, were constructed from the most stable Se-I (P3121) phase. The ultrathin nanorods generated by the Se-I phase were found to be unstable with respect to spontaneous torsion deformations, which slightly shift the helical axis order away from its crystallographic integer value of 3. In order to describe their correct atomic structure, one should use the line symmetry groups and determine the exact order of the helical axis for each nanorod. As the nanorod thickness increases, the true order quickly approaches the crystallographic value, but is never equal to it. Nanorods with a square geometric shape were constructed from the Se-II' (I41/acd) phase. Depending on their thickness, these nanorods are classified as either chiral or achiral, exhibiting p4122 or p4c2 symmetries, respectively. It was shown that square nanorods represent a unique class of nanostructures that alternately exhibit chiral and achiral properties as their thickness increases. Chiral square nanorods are unstable with respect to spontaneous torsion deformations, which shift the helical axis order from the crystallographic integer value of 4 (similar to nanorods cut from the Se-I phase). At the same time, achiral square nanorods are stable with respect to spontaneous torsion deformations.

对两大块硒相切割的超薄纳米棒进行了量子化学计算。用最稳定的Se-I (p3121)相构建了两组具有三角形和六边形几何形状的纳米棒,分别由棒状对称群p31和p3121描述。发现由Se-I相生成的超薄纳米棒在自发扭转变形方面是不稳定的,这使得螺旋轴的顺序稍微偏离了其晶体学整数值3。为了描述其正确的原子结构,人们应该使用线对称群并确定每个纳米棒的螺旋轴的确切顺序。随着纳米棒厚度的增加,真实阶数迅速接近晶体学值,但永远不会等于它。采用Se-II′(I41/acd)相构建了方形纳米棒。根据它们的厚度,这些纳米棒被分为手性或非手性,分别表现出p4122或p4c2对称性。结果表明,方形纳米棒代表了一类独特的纳米结构,随着其厚度的增加,它们交替表现出手性和非手性。手性方形纳米棒在自发扭转变形方面是不稳定的,这使得螺旋轴的顺序从晶体学的整数值4偏移(类似于从Se-I相切割的纳米棒)。同时,非手性方形纳米棒在自发扭转变形方面是稳定的。
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引用次数: 0
Atomic pair distribution functions from textured polycrystalline samples: fundamentals. 从纹理多晶样品的原子对分布函数:基础。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-09-18 DOI: 10.1107/S2053273325007387
Zizhou Gong, Songsheng Tao, Simon J L Billinge

Equations for the reduced structure function and atomic pair distribution function (PDF) of a textured polycrystalline sample are formulated in terms of the orientational distribution function (ODF) and the structure function from a single crystallite. This ODF is sensitive to orientational distributions of interatomic vectors and to differentiate it from the crystallographic case we call it the bond orientational distribution function (BODF). This BODF may be obtained from experimental data when the structure of the reference crystallite is known. It can be applied to nanocrystalline and amorphous samples going beyond the information present in a conventional crystallographic texture study.

用取向分布函数(ODF)和单晶结构函数来表示织构多晶样品的简化结构函数和原子对分布函数(PDF)。这种ODF对原子间矢量的取向分布很敏感,为了区别于晶体情况,我们称之为键取向分布函数(BODF)。当参考晶体的结构已知时,可以从实验数据中得到BODF。它可以应用于纳米晶和非晶样品,超越了传统晶体结构研究中存在的信息。
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引用次数: 0
The separation of the effects of atomic displacement and local resolution in crystallographic and cryo-electron microscopy maps. 晶体学和低温电镜图中原子位移和局部分辨率影响的分离。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-09-15 DOI: 10.1107/S2053273325008034
Vladimir Y Lunin, Natalia L Lunina

Uncertainties in atomic coordinates and finite resolution blur the image of an atom's density present in the observed map. A resolution cutoff leads to an additional effect, known as Fourier ripples. Ignoring these ripples when calculating an atomic model map makes it difficult to deconvolute these two sources of image blurring. However, it is possible to separate the effects of the atomic displacement and local resolution cutoff in the course of real-space refinement if an advanced method for calculating the image of the atom in the observed map is used, which includes modeling of ripples.

原子坐标的不确定性和有限的分辨率模糊了观测图中原子密度的图像。分辨率截断会导致额外的效应,即傅立叶波纹。在计算原子模型图时忽略这些涟漪会使这两个图像模糊源难以解卷积。然而,如果使用一种先进的方法来计算观察到的地图中的原子图像,其中包括波纹建模,则可以在实际空间细化过程中分离原子位移和局部分辨率截断的影响。
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引用次数: 0
X-ray dynamical diffraction wavefront division interferometer (double-slit diffraction) with an asymmetric monochromator. 非对称单色x射线动态衍射波前分割干涉仪(双缝衍射)。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-09-12 DOI: 10.1107/S2053273325007636
Vahram Mkrtchyan, Minas Balyan, Sargis Petrosyan, Ashot Aivazyan

For incident spherical waves, a system consisting of an asymmetric monochromator and an X-ray interferometer with wavefront division is considered. The wave reflected from the monochromator, having passed through a double-slit system, falls on the second crystal. The analysis leads to a requirement for the monochromator asymmetry coefficient that allows interference fringes to be observed in the diffracted beam. Diagrams are drawn that also allow determination of the observability of the fringes. The results obtained can be used for experimental observation of dynamical diffraction Young fringes, for realization of an X-ray interferometer with wavefront division, for determination of defects and deformation fields of the crystal, and for realization of a dynamical diffraction Fourier holographic scheme in the diffracted beam.

对于入射球面波,考虑了一个由非对称单色仪和带波前分割的x射线干涉仪组成的系统。单色器反射的波经过双缝系统后落在第二个晶体上。分析导致要求单色不对称系数,允许干涉条纹在衍射光束中被观察到。绘制的图表也允许确定条纹的可观测性。所得结果可用于动态衍射杨氏条纹的实验观测、波前分割x射线干涉仪的实现、晶体缺陷场和变形场的确定以及衍射光束中动态衍射傅立叶全息方案的实现。
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引用次数: 0
Towards a taxonomy of nets: supersymmetric 2- and 3-periodic structures in three-dimensional Euclidean space. 网络的分类:三维欧几里得空间中的超对称2周期和3周期结构。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-10-14 DOI: 10.1107/S2053273325008733
Mian Li, Michael O'Keeffe, Michael M J Treacy

Supersymmetric structures are defined as edge-transitive spatial graphs where the order of the site symmetry at each vertex is at least twice the coordination number of the vertex. Only 11 vertex- and edge-transitive connected periodic graphs possess this property, which we describe. We identify 32 examples of supersymmetric vertex 2-transitive, edge-transitive nets, also detailed here. Additionally, we list supersymmetric interpenetrating and interwoven structures, including weavings and polycatenanes.

超对称结构被定义为边传递的空间图,其中每个顶点的位置对称顺序至少是顶点的配位数的两倍。只有11个点边传递连通周期图具有这一性质,我们对其进行了描述。我们确定了32个超对称顶点2-传递,边传递网络的例子,也在这里详细说明。此外,我们列出了超对称互穿和交织结构,包括编织和聚连环烷。
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引用次数: 0
Computing the bridge length: the key ingredient in a continuous isometry classification of periodic point sets. 计算桥梁长度:周期点集连续等距分类的关键因素。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-11-01 Epub Date: 2025-10-17 DOI: 10.1107/S2053273325008253
Jonathan McManus, Vitaliy Kurlin

The fundamental model of any periodic crystal is a periodic set of points at all atomic centres. Since crystal structures are determined in a rigid form, their strongest equivalence is rigid motion (composition of translations and rotations) or isometry (also including reflections). The recent classification of periodic point sets under rigid motion used a complete invariant isoset whose size essentially depends on the bridge length, defined as the minimum `jump' that suffices to connect any points in the given set. We propose a practical algorithm to compute the bridge length of any periodic point set given by a motif of points in a periodically translated unit cell. The algorithm has been tested on a large crystal dataset and is required for an efficient continuous classification of all periodic crystals. The exact computation of the bridge length is a key step to realizing the inverse design of materials from new invariant values.

任何周期性晶体的基本模型都是所有原子中心的周期性点集。由于晶体结构以刚性形式确定,因此它们最强的等效性是刚性运动(由平移和旋转组成)或等距(也包括反射)。最近的周期点集在刚性运动下的分类使用了一个完全不变的等集,其大小基本上取决于桥的长度,定义为最小的“跳”,足以连接给定集中的任何点。我们提出了一种实用的算法来计算任意周期点集的桥长度,该周期点集由周期平移的单元格中的点组成。该算法已在大型晶体数据集上进行了测试,并且需要对所有周期晶体进行有效的连续分类。桥梁长度的精确计算是实现新不变值下材料反设计的关键步骤。
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引用次数: 0
Temporal ghost imaging for pump-probe X-ray solution scattering. 泵浦探针x射线溶液散射的时间鬼影成像。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-01 Epub Date: 2025-07-07 DOI: 10.1107/S2053273325004243
B R Mobley, Kevin E Schmidt, R A Kirian

Time-resolved small- and wide-angle X-ray scattering is a valuable tool for investigating biomolecular dynamics on a wide variety of timescales, without cryo-freezing or crystallization. However, some systems, such as the initial excitation of photo-active proteins, evolve dynamically on timescales that may be faster than the duration of the pump and probe beams. Data from a single pump-probe pulse pair therefore contain information from a mixture of time points. In this work, a simple algorithm is developed to recover the dynamics of solution scattering profiles. It leverages information about the pump and probe pulse beams' temporal profiles by using the same mathematical framework as ghost imaging [Pittman et al. (1995). Phys. Rev. A 52, R3429-R3432; Bennink et al. (2002). Phys. Rev. Lett. 89, 113601; Gatti et al. (2004). Phys. Rev. Lett. 93, 093602]. Results from several simulated data sets are presented.

时间分辨的小角度和广角x射线散射是研究生物分子动力学在各种时间尺度上的有价值的工具,不需要冷冻或结晶。然而,一些系统,如光活性蛋白的初始激发,在时间尺度上动态演化,可能比泵浦和探针光束的持续时间要快。因此,来自单个泵浦-探针脉冲对的数据包含来自混合时间点的信息。本文提出了一种简单的溶液散射动态恢复算法。它通过使用与鬼影成像相同的数学框架来利用泵浦和探针脉冲光束的时间剖面信息[Pittman et al.(1995)]。理论物理。Rev. A 52, R3429-R3432;Bennink et al.(2002)。理论物理。Rev. Lett. 89, 113601;Gatti等人(2004)。理论物理。[j].生物工程学报,1999,9(2):391 - 396。给出了几个模拟数据集的结果。
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引用次数: 0
Modelling regularity of Si/Al distributions in disordered tectosilicates - application to zeolites with the GIS framework type. 无序构造硅酸盐中Si/Al分布规律的建模——基于GIS框架型的沸石应用。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-01 Epub Date: 2025-08-15 DOI: 10.1107/S2053273325006217
Montauban Moreira de Oliveira, Jean Guillaume Eon

As an extension of a previous work, we analyse ordered and disordered Si/Al distributions in a few tectosilicates. The method is based on an analysis of the inter-relations between maximal independent sets in a labelled quotient graph of the net. The analysis suggests the presence of specific disordered substructures, called here alveoli, coexisting with fully ordered parts, defining partial order in submicroscopic domains. The method is first illustrated with bikitaite, chabazite and analcime and fully developed for natural zeolites with the GIS framework type. We show that the principle of maximal independence applied to the labelled quotient graph of the net gis can be used to justify composition and order/disorder of the two ordered phases gismondine and amicite and of the disordered phases garronite and gobbinsite. To this list of natural zeolites, we add the disordered, synthetic Na-P2 phase. The results are in good agreement with published 29Si magic-angle spinning NMR data for bikitaite, chabazite and analcime.

作为先前工作的延伸,我们分析了几种构造硅酸盐中有序和无序的Si/Al分布。该方法基于对网络标记商图中最大独立集之间相互关系的分析。分析表明存在特定的无序亚结构,称为肺泡,与完全有序的部分共存,在亚微观领域定义部分有序。该方法首先以bikitaite、chahabazite和alcime为例,并充分发展为具有GIS框架类型的天然沸石。我们证明了应用于网络gis标记商图的最大独立性原理可以用来证明两个有序相吉斯蒙丁和阿米石以及无序相加罗石和戈氏石的组成和有序/无序。在这个天然沸石列表中,我们添加了无序的合成Na-P2相。研究结果与已发表的双矽辉石、茶巴石和安钙石的29Si魔角自旋核磁共振数据吻合较好。
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引用次数: 0
Machine learning for the classification of serial electron diffraction patterns: synthetic data. 用于连续电子衍射图分类的机器学习:合成数据。
IF 1.8 4区 材料科学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-09-01 Epub Date: 2025-07-07 DOI: 10.1107/S2053273325005327
Tatiana E Gorelik, Evgeny Gorelik

Serial electron crystallography faces a fundamental challenge due to the flat Ewald sphere resulting from the short electron wavelength, leading to limited 3D information in individual patterns. Recently, an algorithm for unit-cell determination from zonal electron diffraction patterns (GM algorithm) [Miehe (1997). Ber. Dtsch. Miner. Ges. Beih. z. Eur. J. Miner. 9, 250; Gorelik et al. (2025). Acta Cryst. A81, 124-136] was introduced in the context of serial electron crystallography. This algorithm requires the extraction of 2D zonal patterns from the complete serial dataset. Here, we present a machine learning approach for pattern sorting and apply it initially to simulated electron diffraction patterns.

序列电子晶体学面临着一个根本性的挑战,因为电子波长短导致埃瓦尔德球平坦,导致单个模式的三维信息有限。最近,一种从带状电子衍射图中确定单位细胞的算法(GM算法)[Miehe(1997)]。方方面面。Dtsch。矿工。全球经济。Beih。z。欧元。J. Miner. 9,250;Gorelik et al.(2025)。Acta结晶。[A81, 124-136]在连续电子晶体学的背景下被介绍。该算法需要从完整的序列数据集中提取二维区域模式。在这里,我们提出了一种用于模式分类的机器学习方法,并将其最初应用于模拟电子衍射模式。
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引用次数: 0
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Acta Crystallographica Section A: Foundations and Advances
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