Predicting alveolar ventilation heterogeneity in pulmonary fibrosis using a non-uniform polyhedral spring network model.

Frontiers in network physiology Pub Date : 2023-02-01 eCollection Date: 2023-01-01 DOI:10.3389/fnetp.2023.1124223
Joseph K Hall, Jason H T Bates, Dylan T Casey, Erzsébet Bartolák-Suki, Kenneth R Lutchen, Béla Suki
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Abstract

Pulmonary Fibrosis (PF) is a deadly disease that has limited treatment options and is caused by excessive deposition and cross-linking of collagen leading to stiffening of the lung parenchyma. The link between lung structure and function in PF remains poorly understood, although its spatially heterogeneous nature has important implications for alveolar ventilation. Computational models of lung parenchyma utilize uniform arrays of space-filling shapes to represent individual alveoli, but have inherent anisotropy, whereas actual lung tissue is isotropic on average. We developed a novel Voronoi-based 3D spring network model of the lung parenchyma, the Amorphous Network, that exhibits more 2D and 3D similarity to lung geometry than regular polyhedral networks. In contrast to regular networks that show anisotropic force transmission, the structural randomness in the Amorphous Network dissipates this anisotropy with important implications for mechanotransduction. We then added agents to the network that were allowed to carry out a random walk to mimic the migratory behavior of fibroblasts. To model progressive fibrosis, agents were moved around the network and increased the stiffness of springs along their path. Agents migrated at various path lengths until a certain percentage of the network was stiffened. Alveolar ventilation heterogeneity increased with both percent of the network stiffened, and walk length of the agents, until the percolation threshold was reached. The bulk modulus of the network also increased with both percent of network stiffened and path length. This model thus represents a step forward in the creation of physiologically accurate computational models of lung tissue disease.

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利用非均匀多面体弹簧网络模型预测肺纤维化的肺泡通气异质性
肺纤维化(PF)是一种致命的疾病,治疗方法有限,其原因是胶原蛋白过度沉积和交联导致肺实质变硬。尽管肺纤维化的空间异质性对肺泡通气有重要影响,但人们对肺纤维化中肺部结构和功能之间的联系仍然知之甚少。肺实质的计算模型利用空间填充形状的均匀阵列来表示单个肺泡,但具有固有的各向异性,而实际肺组织平均是各向同性的。我们开发了一种基于 Voronoi 的新型肺实质三维弹簧网络模型--无定形网络,与常规多面体网络相比,它在二维和三维上与肺的几何形状更为相似。与显示各向异性力传导的常规网络不同,无定形网络的结构随机性消散了这种各向异性,对机械传导产生了重要影响。然后,我们在网络中加入了可进行随机行走的物质,以模拟成纤维细胞的迁移行为。为了模拟渐进性纤维化,我们在网络中移动药剂,并增加其路径上弹簧的硬度。试剂以不同的路径长度迁移,直到网络中一定比例的区域变得僵硬为止。肺泡通气异质性随着网络僵化百分比和探针移动长度的增加而增加,直至达到渗滤阈值。网络的体积模量也随着网络硬化百分比和路径长度的增加而增加。因此,该模型代表着在创建肺组织疾病生理学精确计算模型方面向前迈进了一步。
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