Molecular Validation of Aulacophora Species Complex within the Geographical Limits of Tamil Nadu

Dilipsundar N, C. N, B. V, A. R, Kumaraperumal R
{"title":"Molecular Validation of Aulacophora Species Complex within the Geographical Limits of Tamil Nadu","authors":"Dilipsundar N, C. N, B. V, A. R, Kumaraperumal R","doi":"10.29321/maj.10.000596","DOIUrl":null,"url":null,"abstract":"The present study aimed to the delimitation of Aulacophora spp. from Tamil Nadu through DNA-barcoding. Samples were collected from three districts of Tamil Nadu and cytochrome c oxidase subunit I (COI) gene ofthree species (A. foveicollis, A. lewisii and A. cincta) was sequenced. Eight specimens were sequenced and was submitted to the Genbank. Molecular delineation of species was done using tree-based (phylogenetic tree), and distance-based (Automatic Barcode Gap Discovery) approaches. The data set consists of 35 sequences, including an out-group. Two phylogenetic trees were constructed using neighborhood joining and maximum likelihood method. Both the trees resulted in six distinct species groups, and the branching topology was also similar for both the trees. A. foveicollis, A. abdominalis and A. relicta had branched into three distinct groups from a single node, and A. cincta and A. lewisii sub-branched into different clades from another node. ABGD method gave six identical species groups similar to that of morphological data. The p-value for the grouping ranges from 0.001–0.0359, which gave satisfactory results for species delineation. Both tree-based and distance-based approachesenabled the rapid delineation of species with accurate species identification.","PeriodicalId":18154,"journal":{"name":"Madras Agricultural Journal","volume":"2040 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Madras Agricultural Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.29321/maj.10.000596","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

Abstract

The present study aimed to the delimitation of Aulacophora spp. from Tamil Nadu through DNA-barcoding. Samples were collected from three districts of Tamil Nadu and cytochrome c oxidase subunit I (COI) gene ofthree species (A. foveicollis, A. lewisii and A. cincta) was sequenced. Eight specimens were sequenced and was submitted to the Genbank. Molecular delineation of species was done using tree-based (phylogenetic tree), and distance-based (Automatic Barcode Gap Discovery) approaches. The data set consists of 35 sequences, including an out-group. Two phylogenetic trees were constructed using neighborhood joining and maximum likelihood method. Both the trees resulted in six distinct species groups, and the branching topology was also similar for both the trees. A. foveicollis, A. abdominalis and A. relicta had branched into three distinct groups from a single node, and A. cincta and A. lewisii sub-branched into different clades from another node. ABGD method gave six identical species groups similar to that of morphological data. The p-value for the grouping ranges from 0.001–0.0359, which gave satisfactory results for species delineation. Both tree-based and distance-based approachesenabled the rapid delineation of species with accurate species identification.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
泰米尔纳德邦地理范围内黄花属物种复合体的分子验证
本研究旨在利用dna条形码技术对泰米尔纳德邦的Aulacophora属进行鉴定。在泰米尔纳德邦的3个地区采集样本,对3种A. foveicollis、A. lewisii和A. cinta的细胞色素c氧化酶亚基I (COI)基因进行了测序。8个标本被测序并提交到Genbank。利用基于树的(系统发育树)和基于距离的(自动条形码间隙发现)方法对物种进行分子描述。数据集由35个序列组成,包括一个外组。采用邻域连接法和最大似然法构建了两个系统发育树。这两棵树都产生了六个不同的物种群,而且这两棵树的分支拓扑结构也很相似。凹尾采珠、腹腹采珠和残叶采珠分别从一个节点分支为3个不同的类群,cinta和lewisi采珠从另一个节点分支为不同的分支。ABGD法得到了与形态学资料相似的6个相同的种群。类群的p值在0.001 ~ 0.0359之间,为物种划分提供了满意的结果。基于树的方法和基于距离的方法都可以快速描绘物种并准确识别物种。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Influence of Different Transplanting days on Yield attributes of Mini clones under Field Conditions for Morus indica (V1) Response of Direct Seeded Rice Under Different Formulation of New Generation Herbicides on Growth And Yield Constraints Faced by the Groundnut Growers in Adoption of Cluster Frontline Demonstration of Villupuram District Inventorying Various Termite Species Attacking Agricultural Crops in Tamil Nadu, India A Comparative Study on the Antioxidant and Antidiabetic Activities off Ethanolic Leaf Extracts of Psidium Guajava L. Varieties
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1