Compact and robust deep learning architecture for fluorescence lifetime imaging and FPGA implementation.

IF 2.4 3区 化学 Q3 CHEMISTRY, ANALYTICAL Methods and Applications in Fluorescence Pub Date : 2023-03-20 DOI:10.1088/2050-6120/acc0d9
Zhenya Zang, Dong Xiao, Quan Wang, Ziao Jiao, Yu Chen, David Day-Uei Li
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引用次数: 2

Abstract

This paper reports a bespoke adder-based deep learning network for time-domain fluorescence lifetime imaging (FLIM). By leveraging thel1-norm extraction method, we propose a 1D Fluorescence Lifetime AdderNet (FLAN) without multiplication-based convolutions to reduce the computational complexity. Further, we compressed fluorescence decays in temporal dimension using a log-scale merging technique to discard redundant temporal information derived as log-scaling FLAN (FLAN+LS). FLAN+LS achieves 0.11 and 0.23 compression ratios compared with FLAN and a conventional 1D convolutional neural network (1D CNN) while maintaining high accuracy in retrieving lifetimes. We extensively evaluated FLAN and FLAN+LS using synthetic and real data. A traditional fitting method and other non-fitting, high-accuracy algorithms were compared with our networks for synthetic data. Our networks attained a minor reconstruction error in different photon-count scenarios. For real data, we used fluorescent beads' data acquired by a confocal microscope to validate the effectiveness of real fluorophores, and our networks can differentiate beads with different lifetimes. Additionally, we implemented the network architecture on a field-programmable gate array (FPGA) with a post-quantization technique to shorten the bit-width, thereby improving computing efficiency. FLAN+LS on hardware achieves the highest computing efficiency compared to 1D CNN and FLAN. We also discussed the applicability of our network and hardware architecture for other time-resolved biomedical applications using photon-efficient, time-resolved sensors.

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用于荧光寿命成像和FPGA实现的紧凑和健壮的深度学习架构。
本文报道了一种定制的基于加法器的时域荧光寿命成像(FLIM)深度学习网络。通过利用1范数提取方法,我们提出了一种不基于乘法卷积的一维荧光寿命AdderNet (FLAN),以降低计算复杂度。此外,我们使用对数尺度合并技术在时间维度上压缩荧光衰减,以丢弃作为对数尺度FLAN (FLAN+LS)衍生的冗余时间信息。与FLAN和传统1D卷积神经网络(1D CNN)相比,FLAN+LS的压缩比分别为0.11和0.23,同时在检索寿命方面保持了较高的准确性。我们使用合成和真实数据广泛评估了FLAN和FLAN+LS。将传统的拟合方法与其他非拟合的高精度算法进行了比较。我们的网络在不同的光子计数场景下获得了较小的重建误差。对于真实数据,我们使用共聚焦显微镜获得的荧光珠数据来验证真实荧光团的有效性,并且我们的网络可以区分不同寿命的珠。此外,我们在现场可编程门阵列(FPGA)上实现了网络架构,并采用后量化技术缩短了位宽,从而提高了计算效率。与1D CNN和FLAN相比,硬件上的FLAN+LS实现了最高的计算效率。我们还讨论了我们的网络和硬件架构在使用光子效率、时间分辨传感器的其他时间分辨生物医学应用中的适用性。
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来源期刊
Methods and Applications in Fluorescence
Methods and Applications in Fluorescence CHEMISTRY, ANALYTICALCHEMISTRY, PHYSICAL&n-CHEMISTRY, PHYSICAL
CiteScore
6.20
自引率
3.10%
发文量
60
期刊介绍: Methods and Applications in Fluorescence focuses on new developments in fluorescence spectroscopy, imaging, microscopy, fluorescent probes, labels and (nano)materials. It will feature both methods and advanced (bio)applications and accepts original research articles, reviews and technical notes.
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