Asymmetric rotations and dimerization driven by normal to modulated phase transition in 4-biphenylcarboxy coupled L-phenylalaninate.

Somnath Dey, Supriya Sasmal, Saikat Mondal, Santosh Kumar, Rituparno Chowdhury, Debashrita Sarkar, C Malla Reddy, Lars Peters, Georg Roth, Debasish Haldar
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Abstract

Amongst the derivatives of 4-biphenylcarboxylic acid and amino acid esters, the crystal structure of 4-biphenylcarboxy-(L)-phenylalaninate is unusual owing to its monoclinic symmetry within a pseudo-orthorhombic crystal system. The distortion is described by a disparate rotational property around the chiral centers (ϕchiral ≃ -129° and 58°) of the two molecules in the asymmetric unit. Each of these molecules comprises planar biphenyl moieties (ϕbiphenyl = 0°). Using temperature-dependent single-crystal X-ray diffraction experiments we show that the compound undergoes a phase transition below T ∼ 124 K that is characterized by a commensurate modulation wavevector, q = δ(101), δ = ½. The (3+1)-dimensional modulated structure at T = 100 K suggests that the phase transition drives the biphenyl moieties towards noncoplanar conformations with significant variation of internal torsion angle (ϕmaxbiphenyl ≤ 20°). These intramolecular rotations lead to dimerization of the molecular stacks that are described predominantly by distortions in intermolecular tilts (θmax ≤ 20°) and small variations in intermolecular distances (Δdmax ≃ 0.05 Å) between biphenyl molecules. Atypical of modulated structures and superstructures of biphenyl and other polyphenyls, the rotations of individual molecules are asymmetric (Δϕbiphenyl ≈ 5°) while ϕbiphenyl of one independent molecule is two to four times larger than the other. Crystal-chemical analysis and phase relations in superspace suggest multiple competing factors involving intramolecular steric factors, intermolecular H-C...C-H contacts and weak C-H...O hydrogen bonds that govern the distinctively unequal torsional properties of the molecules.

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4-联苯羧基偶联l -苯丙酸盐的正态到调制相变驱动的不对称旋转和二聚化。
在4-联苯羧酸和氨基酸酯的衍生物中,4-联苯羧酸-(L)-苯丙酸酯的晶体结构是不寻常的,因为它在伪正交晶系中具有单斜对称性。不对称单元中两个分子的手性中心(chiral≃-129°和- 58°)周围的不同旋转性质描述了这种畸变。这些分子中的每一个都由平面联苯部分组成(ϕbiphenyl = 0°)。利用温度相关的单晶x射线衍射实验,我们发现该化合物在T ~ 124 K以下发生相变,其特征是相应的调制波,q = δ(101), δ =½。T = 100 K时的(3+1)维调制结构表明,相变驱动联苯部分向非共面构象转变,其内扭转角变化显著(ϕmaxbiphenyl≤20°)。这些分子内的旋转导致了分子堆的二聚化,这种二聚化主要表现为分子间倾斜的扭曲(θmax≤20°)和分子间距离的微小变化(Δdmax≃0.05 Å)。不典型的调制结构和上层结构的联苯和其他多苯基,单个分子的旋转是不对称的(Δϕbiphenyl≈5°),而一个独立分子的大肠杆菌比另一个大2至4倍。晶体化学分析和超空间的相关系表明,分子内的空间因素、分子间的H-C - C-H接触和弱C-H - h接触是多种相互竞争的因素。氢键控制着分子明显不均匀的扭转特性。
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来源期刊
Acta crystallographica Section B, Structural science, crystal engineering and materials
Acta crystallographica Section B, Structural science, crystal engineering and materials CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
3.60
自引率
5.30%
发文量
0
期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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