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CRYSP: construction and visualization of crystal shapes in natural habits and on planar substrates. 在自然习惯和平面基底上的晶体形状的构造和可视化。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 DOI: 10.1107/S2052520625011540
Xing Zhong Li

CRYSP has been developed as a crystallographic tool for the construction and visualization of crystal shapes. The input parameters for software are crystal structure files, Miller indices, and corresponding minimum surface energies. A graphical user-friendly interface is provided, along with automatic conversion from crystallographic space groups to point groups, simplifying the input of interfacial energies and their orientations. The algorithm of Wulff construction, as described in a research paper on the SOWOS software, has been modified to include a cleavage option, enabling the identification of very small facets, short edges, and nearly coincidence vertices. This enhancement allows the construction of crystal shapes both in natural habits and on planar substrates, the latter corresponding to the Winterbottom construction. Visualization in pseudo-color is provided, including facet indices and quantitative parameters such as edge length, facet area, and crystal volume. The software also supports morphologies associated with non-crystallographic point groups, e.g. icosahedral symmetry. CRYSP serves as a versatile tool for crystallography, nanostructures and any other field where crystal facets are involved.

CRYSP是一种用于构建和可视化晶体形状的晶体学工具。软件输入参数为晶体结构文件、米勒指数和相应的最小表面能。提供了图形友好的界面,以及从晶体空间群到点群的自动转换,简化了界面能量及其方向的输入。在一篇关于SOWOS软件的研究论文中描述的Wulff构造算法已经被修改为包括解理选项,从而能够识别非常小的切面、短边缘和几乎重合的顶点。这种增强允许在自然习惯和平面基底上构建晶体形状,后者对应于Winterbottom结构。提供了伪彩色的可视化,包括面指数和定量参数,如边缘长度、面面积和晶体体积。该软件还支持与非晶体点群相关的形态学,例如二十面体对称。CRYSP作为晶体学、纳米结构和任何其他涉及晶体切面的领域的通用工具。
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引用次数: 0
Acta Crystallographica Section B welcomes three new Co-editors. Acta crystalgraphica Section B欢迎三位新的共同编辑。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 DOI: 10.1107/S2052520626000685
Louise Dawe, Andrzej Katrusiak, Ashwini Nangia, Amanda Berry

The newest three members of the Editorial Board of Acta Crystallographica Section B are introduced.

介绍了《晶体学报》B版编委会的最新三位成员。
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引用次数: 0
Spatial distribution of 6s2 lone electron pair in Pb4Na(PO4)3 and stereochemical activity of the 6s2 electron cloud in lead-bearing apatites. Pb4Na(PO4)3中6s2孤电子对的空间分布及含铅磷灰石中6s2电子云的立体化学活性
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 DOI: 10.1107/S2052520625010844
Kotomi Hirano, Hiroki Okudera

Single crystals of lacunary apatite structure-type compound Pb4Na(PO4)3 were prepared with a flux/solid-state-reaction technique and consecutive melt-growth to examine spatial distribution and stereochemical activity of the 6s2 lone electron pair of Pb2+ using X-ray diffraction. The target compound crystallized in space group P63/m with unit-cell edge lengths a = 9.7345 (12) Å and c = 7.2130 (18) Å without any indication of configurational ordering of Pb2+ and Na+ at the crystallographic A1 site. The anion channel running through the structure was confirmed as vacant. Residual density attributable to the deformed 6s2 electron cloud was found 0.6 Å apart from the A2-site position on the A2 triangle normal to c. The lack of a channel-site anion induced shrinkage of the unit cell and the O3 trigonal antiprism in the xy plane, and an increase in the twist angle of the A1O6 trigonal metaprism compensated for the shrinkage of the latter to keep the volume of the A1O9 coordination polyhedron constant. Systematic comparison of the size of the A2 triangle in Pb4Na(PO4)3 and other apatite-type compounds indicates no contribution from the 6s2 electron orbital on the size of the A2 triangle and limited space-filling ability of the orbital. A2 cations are attached on the periphery of a large void formed by the in-plane distortion of the hexagonal close packed arrangement of (BO4)3- complex anions. In other words, a face-sharing array of A2 octahedra was inserted `as a tube' through the framework. The sizes of A1O9 and BO4 polyhedra and their framework define the maximum size of the A2 triangle, while the triangle can easily be shrunk by attraction from an anion, such as F-, in the channel.

采用通量/固相反应技术和连续熔融生长法制备了空腔磷灰石结构型化合物Pb4Na(PO4)3单晶,并用x射线衍射研究了Pb2+ 6s2孤电子对的空间分布和立体化学活性。目标化合物在P63/m空间群中结晶,单位胞边长度为a = 9.7345 (12) Å和c = 7.2130 (18) Å,在晶体学A1位点没有Pb2+和Na+的构型顺序。通过结构的阴离子通道被证实是空的。在与c垂直的A2三角形上,除A2位外,6s2电子云变形导致的剩余密度为0.6 Å。通道位阴离子的缺乏导致单位胞和O3三角反棱镜在xy平面上的收缩,a106三角反棱镜的扭转角的增加补偿了后者的收缩,以保持a109配位多面体的体积不变。系统比较了Pb4Na(PO4)3和其他磷灰石型化合物中A2三角形的大小,发现6s2电子轨道对A2三角形的大小和有限的空间填充能力没有影响。A2阳离子附着在由(BO4)3-络合阴离子的六边形紧密排列的平面内畸变形成的大空隙的外围。换句话说,一个由A2八面体组成的面部共享阵列“作为管子”通过框架插入。a109和BO4多面体的尺寸及其框架决定了A2三角形的最大尺寸,而三角形很容易受到通道中阴离子(如F-)的吸引而缩小。
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引用次数: 0
The complex stacking disorder of Fe- and Ru-based 1,1'-(3,6-pyrazabolyl)metallocenes. 铁基和钌基1,1′-(3,6-吡唑啉)茂金属的复杂堆积无序。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 DOI: 10.1107/S2052520625009758
Berthold Stöger, Alexandr Virovets, Mischa Wenisch

1,1'-(3,6-Pyrazabolyl)ferrocene [Fc(BHpz)2] and the corresponding ruthenocene [Rc(BHpz)2] crystallize as order-disorder (OD) structures with layers of Pma(m) symmetry. Since the m[100] reflection and the a[010] glide reflection planes of adjacent layers do not overlap, given one layer, the adjacent layer can be placed in four distinct, but geometrically equivalent, positions. There are accordingly four polytypes of a maximum degree of order (MDO). One analyzed Fc(BHpz)2 crystal was composed of a mixture of the MDO1 polytype in four distinct orientations and the MDO3 polytype. A second crystal was essentially a single crystal of one out of two orientation of MDO3. In two analyzed crystals of Rc(BHpz)2, the MDO1 polytype (P1) was the major polytype and was observed in four or two orientation states, respectively. Pronounced diffuse scattering is attributed to a complex disorder, which cannot be explained by simple growth models. One Rc(BHpz)2 crystal features additional peaks in the diffraction pattern attributed to fragments of MDO3.

1,1′-(3,6-吡唑酰基)二茂铁[Fc(BHpz)2]和相应的二茂铁[Rc(BHpz)2]结晶为具有Pma(m)对称层的有序-无序(OD)结构。由于相邻层的m[100]反射面和a[010]滑动反射面不重叠,因此给定一层,相邻层可以放置在四个不同但几何上等效的位置。因此,有最大有序度(MDO)的四种多型。一种被分析的Fc(BHpz)2晶体由四个不同取向的MDO1多型和MDO3多型的混合物组成。第二个晶体本质上是MDO3的两个取向中的一个的单晶。在两种分析的Rc(BHpz)2晶体中,MDO1多型(P1)为主要多型,分别存在4种或2种取向态。明显的漫射散射归因于一种复杂的无序,这不能用简单的增长模型来解释。其中一个Rc(BHpz)2晶体在MDO3碎片的衍射图中有额外的峰。
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引用次数: 0
Floating zone growth of high-purity MgO substrate single crystals. 高纯MgO衬底单晶的浮区生长。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 DOI: 10.1107/S2052520625010893
Christo Guguschev, Michael Schulze, Andrea Dittmar, Detlef Klimm, Kaspars Dadzis, Thomas Schroeder, Knut Peters, Aakash Pushp

MgO single crystals with diameters between 3.5 and 5 mm and lengths up to 40 mm were grown by the optical floating zone technique (OFZ). Despite challenging material properties such as the high melting point of 2825°C, very high evaporation rate and perfect {100} cleaving characteristics, crack-free crystals were grown at high growth rates exceeding 40 mm h-1 and at high thermal gradients. Chemical investigations revealed that the OFZ technique is suitable for the preparation of substrate crystals with a purity of 5N to facilitate the development of novel demonstrator devices based on epitaxially grown thin films. The achieved purity level is improved by more than one order of magnitude if compared to commercial MgO substrate single crystals graded as high purity.

利用光学浮区技术(OFZ)生长出直径在3.5 ~ 5mm之间、长度可达40mm的MgO单晶。尽管具有挑战性的材料性能,如2825°C的高熔点,非常高的蒸发速率和完美的{100}切割特性,但无裂纹晶体以超过40 mm h-1的高生长速率和高热梯度生长。化学研究表明,OFZ技术适用于制备纯度为5N的衬底晶体,有助于开发基于外延生长薄膜的新型演示器件。如果与商业MgO衬底单晶分级为高纯度相比,所获得的纯度水平提高了一个数量级以上。
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引用次数: 0
Disappearance of peculiarly large atomic displacement in the high-temperature phase of magnetite with substitution of Fe2+ by Ni2+ and Mn2. 用Ni2+和Mn2取代Fe2+使磁铁矿高温相中特大原子位移消失。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2026-02-01 DOI: 10.1107/S2052520625009928
Takumi Kitamura, Takahiro Niimi, Hiroki Okudera

Single crystal specimens of Fe2.992O4 (magnetite), Fe3-x-yMnxyO4 (x ≤ 0.980) and Fe3-x-yNixyO4 (x ≤ 0.513, □ denotes point defects) are prepared using a floating-zone technique, and changes in their structural parameter values with x are examined at room temperature. Preferences of Mn, Ni and point defects at A, B and B sites, respectively, are confirmed by single-crystal X-ray diffraction experiments, while preference of Mn at the A site is not perfectly accomplished in Fe2.010Mn0.980O4. Mean-square displacements of atoms along the 3 axis in [111] are peculiarly large at the B site in Fe2.992O4 and the displacement decreased smoothly in both series, to nearly half in Fe2.00Mn0.980O4, with increasing amount of heteroatom. On the other hand, displacements normal to the direction show only slight convexity with x due to coexistence of the heteroatom. As a result anisotropy in displacements (dominant in [111] at x = 0) is inverted at x = 0.3 in FeMn series and would expectedly be inverted at x ≃ 0.55 in FeNi series. In spite of different locations of heteroatoms and slightly different inversion points on anisotropy, changes in mean-square displacements at the B site in [111] in these series are found on similar lines with changing amounts of heteroatom. In other words, the amount of this displacement is a function of the amount of Fe2+, or remnant electron from the itinerant-electron point-of-view, on the B-site substructure in these compounds. This characteristic lattice mode on the B-site substructure could be interpreted as an average of local distortion of the substructure due to `trimeron' [Senn et al. (2012). Nature, 481, 173-176] and some other modes such as distortion in 〈001〉 [Siratori & Kino (1980). J. Magn. Magn. Mat. 20, 87-90], which moves in the high-temperature structure.

采用浮区法制备了Fe2.992O4(磁铁矿)、Fe3-x-yMnx□yO4 (x≤0.980)和Fe3-x-yNix□yO4 (x≤0.513,□为点缺陷)的单晶试样,并在室温下观察了它们的结构参数值随x的变化。单晶x射线衍射实验证实,在Fe2.010Mn0.980O4中,Mn、Ni和点缺陷分别在A、B、B位点发生了偏好,而Mn在A位点的偏好并没有完全实现。[111]中原子沿3轴的均方位移在Fe2.992O4的B位处特别大,随着杂原子数量的增加,两个系列的均方位移都平稳下降,Fe2.00Mn0.980O4的均方位移接近一半。另一方面,由于杂原子的共存,向法向的位移与x仅表现出轻微的凸性。结果表明,在x = 0时,位移各向异性(在[111]中占主导地位)在x = 0.3处在FeMn系列中反转,并且在x = 0.55处在FeNi系列中反转。尽管杂原子的位置不同,各向异性的反转点也略有不同,但在这些序列中[111]中B位均方位移的变化与杂原子数量的变化在相似的直线上。换句话说,这种位移量是Fe2+量的函数,或者从流动电子的角度来看,这些化合物中b位亚结构上的残余电子。b位子结构上的这种特征晶格模式可以解释为由于“三聚氰胺”导致的子结构局部畸变的平均值[Senn等人(2012)]。Nature, 481, 173-176]和其他一些模式,如< 001 >的失真[Siratori & Kino(1980)]。j .增效。粉剂。Mat. 20, 87-90],在高温结构中运动。
{"title":"Disappearance of peculiarly large atomic displacement in the high-temperature phase of magnetite with substitution of Fe<sup>2+</sup> by Ni<sup>2+</sup> and Mn<sup>2</sup>.","authors":"Takumi Kitamura, Takahiro Niimi, Hiroki Okudera","doi":"10.1107/S2052520625009928","DOIUrl":"10.1107/S2052520625009928","url":null,"abstract":"<p><p>Single crystal specimens of Fe<sub>2.992</sub>O<sub>4</sub> (magnetite), Fe<sub>3-x-y</sub>Mn<sub>x</sub>□<sub>y</sub>O<sub>4</sub> (x ≤ 0.980) and Fe<sub>3-x-y</sub>Ni<sub>x</sub>□<sub>y</sub>O<sub>4</sub> (x ≤ 0.513, □ denotes point defects) are prepared using a floating-zone technique, and changes in their structural parameter values with x are examined at room temperature. Preferences of Mn, Ni and point defects at A, B and B sites, respectively, are confirmed by single-crystal X-ray diffraction experiments, while preference of Mn at the A site is not perfectly accomplished in Fe<sub>2.010</sub>Mn<sub>0.980</sub>O<sub>4</sub>. Mean-square displacements of atoms along the 3 axis in [111] are peculiarly large at the B site in Fe<sub>2.992</sub>O<sub>4</sub> and the displacement decreased smoothly in both series, to nearly half in Fe<sub>2.00</sub>Mn<sub>0.980</sub>O<sub>4</sub>, with increasing amount of heteroatom. On the other hand, displacements normal to the direction show only slight convexity with x due to coexistence of the heteroatom. As a result anisotropy in displacements (dominant in [111] at x = 0) is inverted at x = 0.3 in FeMn series and would expectedly be inverted at x ≃ 0.55 in FeNi series. In spite of different locations of heteroatoms and slightly different inversion points on anisotropy, changes in mean-square displacements at the B site in [111] in these series are found on similar lines with changing amounts of heteroatom. In other words, the amount of this displacement is a function of the amount of Fe<sup>2+</sup>, or remnant electron from the itinerant-electron point-of-view, on the B-site substructure in these compounds. This characteristic lattice mode on the B-site substructure could be interpreted as an average of local distortion of the substructure due to `trimeron' [Senn et al. (2012). Nature, 481, 173-176] and some other modes such as distortion in 〈001〉 [Siratori & Kino (1980). J. Magn. Magn. Mat. 20, 87-90], which moves in the high-temperature structure.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2026-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12869524/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146016887","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The structures of mcgovernite and carlfrancisite reconsidered: static disorder or ordered defects and twinning? 重新考虑镁钛矿和钙钛矿的结构:静态无序还是有序缺陷和孪晶?
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-01 Epub Date: 2025-11-08 DOI: 10.1107/S2052520625009175
Charles Lake, Robert Von Dreele

The minerals mcgovernite and carlfrancisite possess an extraordinary rhombohedral unit cell [mcgovernite: a = b = 8.206 Å and c = 204.118 Å, with the complex formula unit M2+19Zn3(OH)21(AsO3)(AsO4)3(SiO4)3 (M = Mn, Mg, Zn); carlfrancisite similar]. Hawthorne [(2018), Mineral. Mag. 82, 1101-1118] reported a single-crystal study using a centrosymmetric model (R3c) containing disorder on three cationic sites and an AsIII lone-pair site for both mcgovernite and carlfrancisite. A solution of the structure of mcgovernite from high-resolution synchrotron powder diffraction data suggests a reinterpretation of the crystal structures of mcgovernite and carlfrancisite as noncentrosymmetric R3c with ordered planar defects which allows for merohedral twinning.

镁钙石和钙方石矿物具有特殊的菱面体单体晶胞[镁钙石:a = b = 8.206 Å和c = 204.118 Å],复合分子式为M2+19Zn3(OH)21(AsO3)(AsO4)3(SiO4)3 (M = Mn, Mg, Zn);carlfrancisite相似)。霍桑[2018],矿产。Mag. 82, 1101-1118]报道了一项单晶研究,该研究使用中心对称模型(R3c)对镁铁石和钙铁石的三个阳离子位点和一个AsIII单对位点进行了无序化。从高分辨率同步加速器粉末衍射数据中解出的麦戈文石的结构表明,麦戈文石和钙方石的晶体结构被重新解释为非中心对称的R3c,具有有序的平面缺陷,允许双面体孪晶。
{"title":"The structures of mcgovernite and carlfrancisite reconsidered: static disorder or ordered defects and twinning?","authors":"Charles Lake, Robert Von Dreele","doi":"10.1107/S2052520625009175","DOIUrl":"10.1107/S2052520625009175","url":null,"abstract":"<p><p>The minerals mcgovernite and carlfrancisite possess an extraordinary rhombohedral unit cell [mcgovernite: a = b = 8.206 Å and c = 204.118 Å, with the complex formula unit M<sup>2+</sup><sub>19</sub>Zn<sub>3</sub>(OH)<sub>21</sub>(AsO<sub>3</sub>)(AsO<sub>4</sub>)<sub>3</sub>(SiO<sub>4</sub>)<sub>3</sub> (M = Mn, Mg, Zn); carlfrancisite similar]. Hawthorne [(2018), Mineral. Mag. 82, 1101-1118] reported a single-crystal study using a centrosymmetric model (R3c) containing disorder on three cationic sites and an As<sup>III</sup> lone-pair site for both mcgovernite and carlfrancisite. A solution of the structure of mcgovernite from high-resolution synchrotron powder diffraction data suggests a reinterpretation of the crystal structures of mcgovernite and carlfrancisite as noncentrosymmetric R3c with ordered planar defects which allows for merohedral twinning.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"572-581"},"PeriodicalIF":1.3,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145511551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A case for resonant X-ray Bragg diffraction by a collinear antiferromagnet Li2Ni3P4O14. 共线反铁磁体Li2Ni3P4O14共振x射线Bragg衍射的一个例子。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-01 Epub Date: 2025-11-13 DOI: 10.1107/S2052520625009485
Stephen W Lovesey

Magnetic axial and polar (Dirac) nickel multipoles contribute to resonant X-ray Bragg amplitudes in a symmetry-informed analysis of monoclinic Li2Ni3P4O14 presented for future diffraction experiments. Magnetic long-range order below a temperature of ≃ 14.5 K can be viewed as a two-dimensional trimerized antiferromagnet with Ni ions in two Wyckoff positions in the centrosymmetric (1) magnetic space group P21/c. It permits the coupling to circular polarization in the primary X-ray beam, unlike the corresponding diffraction by an antiferromagnet characterized by anti-inversion (1') and a linear magnetoelectric effect, e.g. historically significant chromium sesquioxide (Cr2O3) and Cu2(MoO4)(SeO3) [Lovesey & van der Laan (2024). Phys. Rev. B 110, 174442]. The space group is inferred from neutron Bragg diffraction patterns, without an allowance for permitted Dirac dipoles (anapoles) and quadrupoles [Chikara et al. (2025). Phys. Rev. B 112, 014438].

磁轴和极性(Dirac)镍多极有助于单斜Li2Ni3P4O14的对称分析共振x射线布拉格振幅,为未来的衍射实验提出。温度低于14.5 K的磁长程序可以看作是在中心对称(1)磁空间群P21/c中的两个Wyckoff位置上具有Ni离子的二维三聚反铁磁体。它允许在主x射线束中耦合圆偏振,而不像反铁磁体的相应衍射,其特征是反反转(1')和线性磁电效应,例如历史上重要的倍半氧化铬(Cr2O3)和Cu2(MoO4)(SeO3) [Lovesey & van der Laan(2024)]。理论物理。[j].中国生物医学工程学报,2011,29(4):444 - 444。空间群是从中子布拉格衍射图推断出来的,没有考虑允许的狄拉克偶极子(反极子)和四极子[Chikara et al.(2025)]。理论物理。[j].生物工程学报,1999,11(4):444 - 444。
{"title":"A case for resonant X-ray Bragg diffraction by a collinear antiferromagnet Li<sub>2</sub>Ni<sub>3</sub>P<sub>4</sub>O<sub>14</sub>.","authors":"Stephen W Lovesey","doi":"10.1107/S2052520625009485","DOIUrl":"10.1107/S2052520625009485","url":null,"abstract":"<p><p>Magnetic axial and polar (Dirac) nickel multipoles contribute to resonant X-ray Bragg amplitudes in a symmetry-informed analysis of monoclinic Li<sub>2</sub>Ni<sub>3</sub>P<sub>4</sub>O<sub>14</sub> presented for future diffraction experiments. Magnetic long-range order below a temperature of ≃ 14.5 K can be viewed as a two-dimensional trimerized antiferromagnet with Ni ions in two Wyckoff positions in the centrosymmetric (1) magnetic space group P2<sub>1</sub>/c. It permits the coupling to circular polarization in the primary X-ray beam, unlike the corresponding diffraction by an antiferromagnet characterized by anti-inversion (1') and a linear magnetoelectric effect, e.g. historically significant chromium sesquioxide (Cr<sub>2</sub>O<sub>3</sub>) and Cu<sub>2</sub>(MoO<sub>4</sub>)(SeO<sub>3</sub>) [Lovesey & van der Laan (2024). Phys. Rev. B 110, 174442]. The space group is inferred from neutron Bragg diffraction patterns, without an allowance for permitted Dirac dipoles (anapoles) and quadrupoles [Chikara et al. (2025). Phys. Rev. B 112, 014438].</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"582-586"},"PeriodicalIF":1.3,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12786385/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145511504","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The charge density and force-field view of bonding interactions in crystals with photomechanical properties: [Co(NH3)5NO2]ClNO3 versus [Co(NH3)5ONO]ClNO3. [Co(NH3)5NO2]ClNO3与[Co(NH3)5ONO]ClNO3光化学性质晶体中成键相互作用的电荷密度和力场视图。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-01 Epub Date: 2025-10-20 DOI: 10.1107/S2052520625008169
Mark Khainovsky, Ekaterina Terekhova, Elena Boldyreva, Vladimir Tsirelson

Charge density and local electrostatic and quantum kinetic electron forces acting on the bound atoms in [Co(NH3)5NO2]ClNO3 (nitro isomer) and [Co(NH3)5ONO]ClNO3 (nitrito isomer) were studied to elucidate to the role of the crystalline environment in the intramolecular nitro-nitrito linkage photoisomerization. Quantum crystallography and orbital-free DFT approaches were applied. In the more stable nitro isomer, the -NO2- group forms two hydrogen bonds with the NH3 ligands, while in the nitrito isomer the -ONO- group is not involved in any hydrogen bonds, however, it forms van der Waals contacts with surrounding atoms. No bond paths in the electron density were found between the anions NO3- and Cl-, which were previously supposed to play an important role in photoisomerization. Still, these anions do interact with each other in both isomers via an indirect mechanism involving H atoms of -NH3 ligands. Whereas there is no direct electrostatic interaction between the anions in the nitro isomer, the part of electrons belonging to the Cl- anion in the nitrito isomer is pulled towards the nucleus of an oxygen atom of the NO3- anion, creating a favorable condition for direct interaction between anions through corresponding local electronic forces directed to the nuclei. The link of cation/anion atomic basin volumes relationship and nature of the intermolecular interactions is established.

研究了[Co(NH3)5NO2]ClNO3(硝基异构体)和[Co(NH3)5ONO]ClNO3(亚硝酸盐异构体)中束缚原子的电荷密度和局部静电电子力和量子动力学电子力,阐明了晶体环境在分子内硝基-亚硝基键光异构反应中的作用。应用了量子晶体学和无轨道DFT方法。在更稳定的硝基异构体中,- no2 -基团与NH3配体形成两个氢键,而在亚硝基异构体中,- ono -基团不参与任何氢键,但它与周围的原子形成范德华接触。在电子密度上没有发现NO3-和Cl-之间的键路径,而这在以前认为在光异构化中起重要作用。尽管如此,这些阴离子在两种异构体中确实通过间接机制相互作用,涉及-NH3配体的H原子。在硝基异构体中,阴离子之间没有直接的静电相互作用,而在硝基异构体中,属于Cl-阴离子的部分电子被吸引到NO3-阴离子的氧原子的原子核上,通过相应的指向原子核的局部电子力,为阴离子之间的直接相互作用创造了有利条件。建立了阳离子/阴离子的原子盆体积关系和分子间相互作用的性质。
{"title":"The charge density and force-field view of bonding interactions in crystals with photomechanical properties: [Co(NH<sub>3</sub>)<sub>5</sub>NO<sub>2</sub>]ClNO<sub>3</sub> versus [Co(NH<sub>3</sub>)<sub>5</sub>ONO]ClNO<sub>3</sub>.","authors":"Mark Khainovsky, Ekaterina Terekhova, Elena Boldyreva, Vladimir Tsirelson","doi":"10.1107/S2052520625008169","DOIUrl":"10.1107/S2052520625008169","url":null,"abstract":"<p><p>Charge density and local electrostatic and quantum kinetic electron forces acting on the bound atoms in [Co(NH<sub>3</sub>)<sub>5</sub>NO<sub>2</sub>]ClNO<sub>3</sub> (nitro isomer) and [Co(NH<sub>3</sub>)<sub>5</sub>ONO]ClNO<sub>3</sub> (nitrito isomer) were studied to elucidate to the role of the crystalline environment in the intramolecular nitro-nitrito linkage photoisomerization. Quantum crystallography and orbital-free DFT approaches were applied. In the more stable nitro isomer, the -NO<sub>2</sub><sup>-</sup> group forms two hydrogen bonds with the NH<sub>3</sub> ligands, while in the nitrito isomer the -ONO<sup>-</sup> group is not involved in any hydrogen bonds, however, it forms van der Waals contacts with surrounding atoms. No bond paths in the electron density were found between the anions NO<sub>3</sub><sup>-</sup> and Cl<sup>-</sup>, which were previously supposed to play an important role in photoisomerization. Still, these anions do interact with each other in both isomers via an indirect mechanism involving H atoms of -NH<sub>3</sub> ligands. Whereas there is no direct electrostatic interaction between the anions in the nitro isomer, the part of electrons belonging to the Cl<sup>-</sup> anion in the nitrito isomer is pulled towards the nucleus of an oxygen atom of the NO<sub>3</sub><sup>-</sup> anion, creating a favorable condition for direct interaction between anions through corresponding local electronic forces directed to the nuclei. The link of cation/anion atomic basin volumes relationship and nature of the intermolecular interactions is established.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"506-516"},"PeriodicalIF":1.3,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145342744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Magnetoelastic effect in R5Pt2In4 (R = Tb-Tm) investigated by neutron powder diffraction. 用中子粉末衍射研究了R5Pt2In4 (R = Tb-Tm)的磁弹性效应。
IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-12-01 Epub Date: 2025-11-07 DOI: 10.1107/S205252062500900X
Aleksandra Deptuch, Stanisław Baran, Lukas Keller, Altifani Rizky Hayyu, Andrzej Szytuła

Thermal evolution of the unit-cell parameters a, b and c as well as the unit-cell volume V of R5Pt2In4 (R = Tb-Tm) is derived from the neutron powder diffraction data. For all investigated compounds, the above mentioned parameters show a noticeable change in vicinity of the critical temperature of the magnetic order. At lower temperatures, additional anomalies are found for R = Tb-Er. These anomalies are related to the magnetic phase transitions of the order-order type originating from appearance and/or rapid increase of the magnetic rare earth moment at one of the 4g Wyckoff sites. The above mentioned results indicate presence of the magnetoelastic effect in the investigated intermetallics. Based on the experimental data, the product of compressibility and magnetoelastic coupling in R5Pt2In4 (R = Tb-Tm) is found to be 0.014 (2)%·μB-2.

由中子粉末衍射数据导出了R5Pt2In4 (R = Tb-Tm)的单胞参数a、b和c的热演化以及单胞体积V。对于所研究的所有化合物,上述参数在磁序临界温度附近都有明显的变化。在较低的温度下,R = Tb-Er发现了额外的异常。这些异常与有序-有序型磁相变有关,这是由其中一个4g Wyckoff点的磁性稀土矩的出现和/或快速增加引起的。上述结果表明所研究的金属间化合物存在磁弹性效应。实验结果表明,R5Pt2In4 (R = Tb-Tm)的可压缩性与磁弹性耦合积为0.014(2)%·μB-2。
{"title":"Magnetoelastic effect in R<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> (R = Tb-Tm) investigated by neutron powder diffraction.","authors":"Aleksandra Deptuch, Stanisław Baran, Lukas Keller, Altifani Rizky Hayyu, Andrzej Szytuła","doi":"10.1107/S205252062500900X","DOIUrl":"10.1107/S205252062500900X","url":null,"abstract":"<p><p>Thermal evolution of the unit-cell parameters a, b and c as well as the unit-cell volume V of R<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> (R = Tb-Tm) is derived from the neutron powder diffraction data. For all investigated compounds, the above mentioned parameters show a noticeable change in vicinity of the critical temperature of the magnetic order. At lower temperatures, additional anomalies are found for R = Tb-Er. These anomalies are related to the magnetic phase transitions of the order-order type originating from appearance and/or rapid increase of the magnetic rare earth moment at one of the 4g Wyckoff sites. The above mentioned results indicate presence of the magnetoelastic effect in the investigated intermetallics. Based on the experimental data, the product of compressibility and magnetoelastic coupling in R<sub>5</sub>Pt<sub>2</sub>In<sub>4</sub> (R = Tb-Tm) is found to be 0.014 (2)%·μ<sub>B</sub><sup>-2</sup>.</p>","PeriodicalId":7320,"journal":{"name":"Acta crystallographica Section B, Structural science, crystal engineering and materials","volume":" ","pages":"528-532"},"PeriodicalIF":1.3,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145470285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Acta crystallographica Section B, Structural science, crystal engineering and materials
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