Theoretical understanding of evolutionary dynamics on inhomogeneous networks.

IF 2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Physical biology Pub Date : 2023-04-21 DOI:10.1088/1478-3975/accb36
Hamid Teimouri, Dorsa B Sattari Khavas, Cade Spaulding, Christopher B Li, Anatoly B Kolomeisky
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引用次数: 3

Abstract

Evolution is the main feature of all biological systems that allows populations to change their characteristics over successive generations. A powerful approach to understand evolutionary dynamics is to investigate fixation probabilities and fixation times of novel mutations on networks that mimic biological populations. It is now well established that the structure of such networks can have dramatic effects on evolutionary dynamics. In particular, there are population structures that might amplify the fixation probabilities while simultaneously delaying the fixation events. However, the microscopic origins of such complex evolutionary dynamics remain not well understood. We present here a theoretical investigation of the microscopic mechanisms of mutation fixation processes on inhomogeneous networks. It views evolutionary dynamics as a set of stochastic transitions between discrete states specified by different numbers of mutated cells. By specifically considering star networks, we obtain a comprehensive description of evolutionary dynamics. Our approach allows us to employ physics-inspired free-energy landscape arguments to explain the observed trends in fixation times and fixation probabilities, providing a better microscopic understanding of evolutionary dynamics in complex systems.

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非均匀网络上进化动力学的理论认识。
进化是所有生物系统的主要特征,它允许种群在连续几代中改变其特征。研究模拟生物种群的网络中新突变的固定概率和固定时间是理解进化动力学的一个有力方法。现在已经确定,这种网络的结构可以对进化动力学产生巨大的影响。特别是,有些种群结构可能会放大固定概率,同时延迟固定事件。然而,这种复杂的进化动力学的微观起源仍然没有得到很好的理解。本文从理论上研究了突变固定过程在非均匀网络上的微观机制。它认为进化动力学是由不同数量的突变细胞指定的离散状态之间的一组随机过渡。通过特别考虑星型网络,我们获得了对进化动力学的全面描述。我们的方法允许我们使用物理学启发的自由能景观论点来解释观察到的固定时间和固定概率的趋势,为复杂系统中的进化动力学提供更好的微观理解。
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来源期刊
Physical biology
Physical biology 生物-生物物理
CiteScore
4.20
自引率
0.00%
发文量
50
审稿时长
3 months
期刊介绍: Physical Biology publishes articles in the broad interdisciplinary field bridging biology with the physical sciences and engineering. This journal focuses on research in which quantitative approaches – experimental, theoretical and modeling – lead to new insights into biological systems at all scales of space and time, and all levels of organizational complexity. Physical Biology accepts contributions from a wide range of biological sub-fields, including topics such as: molecular biophysics, including single molecule studies, protein-protein and protein-DNA interactions subcellular structures, organelle dynamics, membranes, protein assemblies, chromosome structure intracellular processes, e.g. cytoskeleton dynamics, cellular transport, cell division systems biology, e.g. signaling, gene regulation and metabolic networks cells and their microenvironment, e.g. cell mechanics and motility, chemotaxis, extracellular matrix, biofilms cell-material interactions, e.g. biointerfaces, electrical stimulation and sensing, endocytosis cell-cell interactions, cell aggregates, organoids, tissues and organs developmental dynamics, including pattern formation and morphogenesis physical and evolutionary aspects of disease, e.g. cancer progression, amyloid formation neuronal systems, including information processing by networks, memory and learning population dynamics, ecology, and evolution collective action and emergence of collective phenomena.
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