Down-regulation and clinical significance of Sorbin and SH3 domain-containing protein 1 in bladder cancer tissues

IF 1.9 4区 生物学 Q4 CELL BIOLOGY IET Systems Biology Pub Date : 2023-02-28 DOI:10.1049/syb2.12060
Sheng-Hua Li, Gao-Qiang Zhai, Rong-Quan He, Gang Chen, Shi-Shuo Wang, Jia-Lin Liu, Ji-Wen Cheng, Hai-Biao Yan, Zhi-Guang Huang
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Abstract

Bladder cancer (BC) is a common cancer worldwide with a high prevalence. This study was conducted to elucidate the expression and clinical significance of Sorbin and SH3 domain-containing protein 1 (SORBS1) in BC as well as to explore its molecular mechanism in BC tumourigenesis. RNA-sequencing data, microarray, and Immunohistochemistry (IHC) were applied to elucidated the SORBS1 expression at multiple levels. After that, the relationship between tumour-immune infiltration and SORBS1 was also explored. Finally, SORBS1-related genes in BC were identified to perform functional enrichment analyses. The expression integration revealed that the comprehensive expression of SORBS1 at the mRNA level was −1.02 and that at the protein level was −3.73, based on 12 platforms, including 1221 BC and 187 non-BC samples. SORBS1 was negatively correlated with tumour purity (correlation = −0.342, p < 0.001) and positively correlated with macrophage (correlation = 0.358, p < 0.001). The results of enrichment analyses revealed that the most significant biological pathways of SORBS1-related genes were epithelial-mesenchymal transition. SORBS1 was significantly down-regulated in BC and may play a role as tumour suppressor. This study provides new directions and biomarkers for future BC diagnosis.

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Sorbin和SH3结构域蛋白1在膀胱癌组织中的下调及临床意义
膀胱癌(BC)是世界范围内的一种常见癌症,发病率很高。本研究旨在阐明Sorbin和含SH3结构域蛋白1 (SORBS1)在BC中的表达及临床意义,并探讨其在BC肿瘤发生中的分子机制。应用rna测序数据、微阵列和免疫组化(IHC)在多个水平上阐明SORBS1的表达。随后,我们还探讨了肿瘤免疫浸润与SORBS1的关系。最后,对BC中sorbs1相关基因进行功能富集分析。表达整合结果显示,基于12个平台,包括1221个BC和187个非BC样本,SORBS1在mRNA水平的综合表达量为- 1.02,在蛋白水平的综合表达量为- 3.73。SORBS1与肿瘤纯度呈负相关(相关性= - 0.342,p <0.001),与巨噬细胞呈正相关(相关性= 0.358,p <0.001)。富集分析结果显示sorbs1相关基因最重要的生物学途径是上皮-间质转化。SORBS1在BC中显著下调,可能发挥肿瘤抑制作用。本研究为未来的BC诊断提供了新的方向和生物标志物。
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来源期刊
IET Systems Biology
IET Systems Biology 生物-数学与计算生物学
CiteScore
4.20
自引率
4.30%
发文量
17
审稿时长
>12 weeks
期刊介绍: IET Systems Biology covers intra- and inter-cellular dynamics, using systems- and signal-oriented approaches. Papers that analyse genomic data in order to identify variables and basic relationships between them are considered if the results provide a basis for mathematical modelling and simulation of cellular dynamics. Manuscripts on molecular and cell biological studies are encouraged if the aim is a systems approach to dynamic interactions within and between cells. The scope includes the following topics: Genomics, transcriptomics, proteomics, metabolomics, cells, tissue and the physiome; molecular and cellular interaction, gene, cell and protein function; networks and pathways; metabolism and cell signalling; dynamics, regulation and control; systems, signals, and information; experimental data analysis; mathematical modelling, simulation and theoretical analysis; biological modelling, simulation, prediction and control; methodologies, databases, tools and algorithms for modelling and simulation; modelling, analysis and control of biological networks; synthetic biology and bioengineering based on systems biology.
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