Draft Genomes of Halophilic Chromohalobacter and Halomonas Strains Isolated from Brines of The Carpathian Foreland, Poland.

Journal of Genomics Pub Date : 2023-03-21 eCollection Date: 2023-01-01 DOI:10.7150/jgen.80829
Jakub Lach, Dominik Strapagiel, Agnieszka Matera-Witkiewicz, Paweł Stączek
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引用次数: 1

Abstract

Chromohalobacter and Halomonas are genera of bacterial microorganisms belonging to the group of halophiles. They are characterized by high diversity and the ability to produce bioproducts of biotechnological importance, such as ectoine, biosurfactants and carotenoids. Here, we report three draft genomes of Chromohalobacter and two draft genomes of Halomonas isolated from brines. The length of the genomes ranged from 3.6 Mbp to 3.8 Mbp, and GC content was in the 60.11%-66.46% range. None of the analysed genomes has been assigned to any previously known species of the genus Chromohalobacter or Halomonas. Phylogenetic analysis revealed that Chromohalobacter 296-RDG and Chromohalobacter 48-RD10 belonged to the same species, and Chromohalobacter 11-W is more distantly related to the other two analysed strains than to Chromohalobacter canadensis. Halomonas strains 11-S5 and 25-S5 were clustered together and located close to Halomonas ventosae. Functional analysis revealed BGCs related to ectoine production in all genomes analysed. This study increases our overall understanding of halophilic bacteria and is also consistent with the notion that members of this group have significant potential as useful natural product producers.

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波兰喀尔巴阡边疆区卤水中分离的嗜盐嗜色盐杆菌和嗜盐单胞菌的基因组草案。
嗜盐菌属和嗜盐单胞菌属属于嗜盐菌群。它们具有高度的多样性和生产具有生物技术重要性的生物产品的能力,如外泌碱、生物表面活性剂和类胡萝卜素。在这里,我们报道了从盐水中分离的三个嗜盐杆菌的基因组草案和两个嗜盐单胞菌的基因组草案。基因组长度在3.6Mbp至3.8Mbp之间,GC含量在60.11%-66.46%之间。所分析的基因组中没有一个被分配给以前已知的色卤杆菌属或卤单胞菌属。系统发育分析表明,色卤杆菌296-RDG和色卤杆菌48-RD10属于同一物种,并且色卤杆菌11-W与其他两个分析菌株的亲缘关系比与加拿大色卤杆菌的亲缘关系更远。卤单胞菌菌株11-S5和25-S5聚在一起,位于靠近腹单胞菌的位置。功能分析显示,在所有分析的基因组中,BGCs与外泌碱产生有关。这项研究增加了我们对嗜盐细菌的总体了解,也与这一群体的成员作为有用的天然产品生产商具有重大潜力的观点一致。
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来源期刊
自引率
0.00%
发文量
11
审稿时长
12 weeks
期刊介绍: Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.
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