The real reason why ATP hydrolysis is spontaneous at pH > 7: It's (mostly) the proton concentration!

IF 1.2 4区 教育学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochemistry and Molecular Biology Education Pub Date : 2023-06-06 DOI:10.1002/bmb.21745
Todd P. Silverstein
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引用次数: 1

Abstract

Common wisdom holds that ATP hydrolysis is spontaneous because of the weakness of its phosphoanhydride bonds, electrostatic repulsion within the polyanionic ATP4− molecule, and resonance stabilization of the inorganic phosphate and ADP products. By examining the pH-dependence of the hydrolysis Gibbs free energy, we show that in fact, above pH 7, ATP hydrolysis is spontaneous due mainly to the low concentration of the H+ that is released as product. Hence, ATP is essentially just an electrophilic target whose attack by H2O causes the acidity of the water nucleophile to increase dramatically; the spontaneity of the resulting acid ionization supplies much of the released Gibbs free energy. We also find that fermentation lowers pH not due to its organic acid products (e.g., lactic, acetic, formic, or succinic acids), but again, due to the H+ product of ATP hydrolysis.

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ATP水解在pH下自发的真正原因 > 7:(主要)是质子浓度!
普遍认为,ATP水解是自发的,因为它的磷酸酐键较弱,聚阴离子ATP4-分子内的静电排斥,以及无机磷酸盐和ADP产物的共振稳定。通过考察水解吉布斯自由能对pH的依赖性,我们发现,事实上,高于pH 7,ATP水解是自发的,主要是由于作为产物释放的H+浓度低。因此,ATP本质上只是一个亲电靶标,其被H2 O攻击会导致水亲核试剂的酸度急剧增加;所产生的酸电离的自发性提供了大部分释放的吉布斯自由能。我们还发现,发酵降低pH值并不是由于其有机酸产物(如乳酸、乙酸、甲酸或琥珀酸),而是由于ATP水解的H+产物。
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来源期刊
Biochemistry and Molecular Biology Education
Biochemistry and Molecular Biology Education 生物-生化与分子生物学
CiteScore
2.60
自引率
14.30%
发文量
99
审稿时长
6-12 weeks
期刊介绍: The aim of BAMBED is to enhance teacher preparation and student learning in Biochemistry, Molecular Biology, and related sciences such as Biophysics and Cell Biology, by promoting the world-wide dissemination of educational materials. BAMBED seeks and communicates articles on many topics, including: Innovative techniques in teaching and learning. New pedagogical approaches. Research in biochemistry and molecular biology education. Reviews on emerging areas of Biochemistry and Molecular Biology to provide background for the preparation of lectures, seminars, student presentations, dissertations, etc. Historical Reviews describing "Paths to Discovery". Novel and proven laboratory experiments that have both skill-building and discovery-based characteristics. Reviews of relevant textbooks, software, and websites. Descriptions of software for educational use. Descriptions of multimedia materials such as tutorials on various aspects of biochemistry and molecular biology.
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