The role of Dmnt1 during spermatogenesis of the insect Oncopeltus fasciatus.

IF 4.2 2区 生物学 Q1 GENETICS & HEREDITY Epigenetics & Chromatin Pub Date : 2023-07-01 DOI:10.1186/s13072-023-00496-5
Christopher B Cunningham, Emily A Shelby, Elizabeth C McKinney, Robert J Schmitz, Allen J Moore, Patricia J Moore
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Abstract

Background: The function of DNA methyltransferase genes of insects is a puzzle, because an association between gene expression and methylation is not universal for insects. If the genes normally involved in cytosine methylation are not influencing gene expression, what might be their role? We previously demonstrated that gametogenesis of Oncopeltus fasciatus is interrupted at meiosis following knockdown of DNA methyltransferase 1 (Dnmt1) and this is unrelated to changes in levels of cytosine methylation. Here, using transcriptomics, we tested the hypothesis that Dmnt1 is a part of the meiotic gene pathway. Testes, which almost exclusively contain gametes at varying stages of development, were sampled at 7 days and 14 days following knockdown of Dmnt1 using RNAi.

Results: Using microscopy, we found actively dividing spermatocysts were reduced at both timepoints. However, as with other studies, we saw Dnmt1 knockdown resulted in condensed nuclei after mitosis-meiosis transition, and then cellular arrest. We found limited support for a functional role for Dnmt1 in our predicted cell cycle and meiotic pathways. An examination of a priori Gene Ontology terms showed no enrichment for meiosis. We then used the full data set to reveal further candidate pathways influenced by Dnmt1 for further hypotheses. Very few genes were differentially expressed at 7 days, but nearly half of all transcribed genes were differentially expressed at 14 days. We found no strong candidate pathways for how Dnmt1 knockdown was achieving its effect through Gene Ontology term overrepresentation analysis.

Conclusions: We, therefore, suggest that Dmnt1 plays a role in chromosome dynamics based on our observations of condensed nuclei and cellular arrest with no specific molecular pathways disrupted.

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Dmnt1在筋膜oncopelus fasciatus精子发生中的作用。
背景:昆虫DNA甲基化酶基因的功能是一个谜,因为基因表达与甲基化之间的关联并不普遍存在于昆虫中。如果通常参与胞嘧啶甲基化的基因不影响基因表达,那么它们的作用可能是什么?我们之前已经证明,在DNA甲基转移酶1 (Dnmt1)被敲低后,蝶膜oncopelus fasciatus的配子发生在减数分裂时中断,这与胞嘧啶甲基化水平的变化无关。在这里,使用转录组学,我们验证了Dmnt1是减数分裂基因通路的一部分的假设。睾丸几乎完全包含不同发育阶段的配子,在使用RNAi敲除Dmnt1后的7天和14天取样。结果:镜检发现活跃分裂的精囊在两个时间点均减少。然而,与其他研究一样,我们看到Dnmt1敲低导致有丝分裂-减数分裂转变后细胞核凝聚,然后细胞停滞。我们发现Dnmt1在我们预测的细胞周期和减数分裂途径中的功能作用有限。对先天基因本体术语的检查显示减数分裂没有富集。然后,我们使用完整的数据集来揭示受Dnmt1影响的进一步候选途径,以进一步假设。在第7天,很少有基因出现差异表达,但在第14天,几乎一半的转录基因出现差异表达。通过基因本体术语过代表性分析,我们没有发现Dnmt1敲低是如何实现其效果的强有力的候选途径。结论:因此,根据我们对细胞核凝聚和细胞阻滞的观察,我们认为Dmnt1在染色体动力学中起作用,没有特定的分子途径被破坏。
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来源期刊
Epigenetics & Chromatin
Epigenetics & Chromatin GENETICS & HEREDITY-
CiteScore
7.00
自引率
0.00%
发文量
35
审稿时长
1 months
期刊介绍: Epigenetics & Chromatin is a peer-reviewed, open access, online journal that publishes research, and reviews, providing novel insights into epigenetic inheritance and chromatin-based interactions. The journal aims to understand how gene and chromosomal elements are regulated and their activities maintained during processes such as cell division, differentiation and environmental alteration.
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