Shaima Muhammednazaar, Jiaqi Yao, Matthew R Necelis, Yein C Park, Zhongtian Shen, Michael D Bridges, Ruiqiong Guo, Nicole Swope, May S Rhee, Miyeon Kim, Kelly H Kim, Wayne L Hubbell, Karen G Fleming, Linda Columbus, Seung-Gu Kang, Heedeok Hong
{"title":"Lipid bilayer strengthens the cooperative network of membrane proteins.","authors":"Shaima Muhammednazaar, Jiaqi Yao, Matthew R Necelis, Yein C Park, Zhongtian Shen, Michael D Bridges, Ruiqiong Guo, Nicole Swope, May S Rhee, Miyeon Kim, Kelly H Kim, Wayne L Hubbell, Karen G Fleming, Linda Columbus, Seung-Gu Kang, Heedeok Hong","doi":"10.1101/2023.05.30.542905","DOIUrl":null,"url":null,"abstract":"<p><p>Although membrane proteins fold and function in a lipid bilayer constituting cell membranes, their structure and functionality can be recapitulated in diverse amphiphilic assemblies whose compositions deviate from native membranes. It remains unclear how various hydrophobic environments can stabilize membrane proteins and whether lipids play any role therein. Here, using the evolutionary unrelated α-helical and β-barrel membrane proteins of <i>Escherichia coli</i> , we find that the hydrophobic thickness and the strength of amphiphile- amphiphile packing are critical environmental determinants of membrane protein stability. Lipid solvation enhances stability by facilitating residue burial in the protein interior and strengthens the cooperative network by promoting the propagation of local structural perturbations. This study demonstrates that lipids not only modulate membrane proteins' stability but also their response to external stimuli.</p>","PeriodicalId":72407,"journal":{"name":"bioRxiv : the preprint server for biology","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10312574/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"bioRxiv : the preprint server for biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1101/2023.05.30.542905","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
Abstract
Although membrane proteins fold and function in a lipid bilayer constituting cell membranes, their structure and functionality can be recapitulated in diverse amphiphilic assemblies whose compositions deviate from native membranes. It remains unclear how various hydrophobic environments can stabilize membrane proteins and whether lipids play any role therein. Here, using the evolutionary unrelated α-helical and β-barrel membrane proteins of Escherichia coli , we find that the hydrophobic thickness and the strength of amphiphile- amphiphile packing are critical environmental determinants of membrane protein stability. Lipid solvation enhances stability by facilitating residue burial in the protein interior and strengthens the cooperative network by promoting the propagation of local structural perturbations. This study demonstrates that lipids not only modulate membrane proteins' stability but also their response to external stimuli.