Structural study of wild-type and phospho-mimic XRCC4 dimer and multimer proteins using circular dichroism spectroscopy.

IF 2.1 4区 医学 Q2 BIOLOGY International Journal of Radiation Biology Pub Date : 2023-01-01 Epub Date: 2023-06-01 DOI:10.1080/09553002.2023.2214210
Kai Nishikubo, Maho Hasegawa, Yudai Izumi, Kentaro Fujii, Koichi Matsuo, Yoshihisa Matsumoto, Akinari Yokoya
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Abstract

Purpose: To investigate the structural features of wild-type and phospho-mimicking mutated XRCC4 protein, a protein involved in DNA double-strand break repair.

Materials and methods: XRCC4 with a HisTag were expressed by E. coli harboring plasmid DNA and purified. Phospho-mimicking mutants in which one phosphorylation site was replaced with aspartic acid were also prepared in order to reproduce the negative charge resulting from phosphorylation. The proteins were separated into dimers and multimers by gel filtration chromatography. Circular dichroism (CD) spectroscopy was performed in the region from ultraviolet to vacuum-ultraviolet. The CD spectra were analyzed with two analysis programs to evaluate the secondary structures of the wild-type and phospho-mimicked dimers and multimers.

Result and discussion: The proportion of β-strand in the wild-type dimers was very low, particularly in their C-terminal region, including the five phosphorylation sites. The secondary structure of the phospho-mimic hardly changed in the dimeric form. In contrast, the β-strand content increased and the α-helix content decreased upon multimerization of the wild-type protein. The structural change of multimers slightly depended on the phospho-mimic site. These results suggest that the β-strand structure stabilizes the multimerization of XRCC4 and it is regulated by phosphorylation at the C-terminal site in living cells.

Conclusion: An increase in the β-strand content in XRCC4 is essential for stabilization of the multimeric form through C-terminal phosphorylation, allowing the formation of the large double-strand break repair machinery.

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使用圆二色光谱法对野生型和磷酸模拟XRCC4二聚体和多聚体蛋白的结构研究。
目的:研究参与DNA双链断裂修复的野生型和磷酸化模拟突变XRCC4蛋白的结构特征。材料和方法:用携带质粒DNA的大肠杆菌表达带有HisTag的XRCC4并进行纯化。还制备了一个磷酸化位点被天冬氨酸取代的磷酸化模拟突变体,以重现磷酸化产生的负电荷。通过凝胶过滤色谱法将蛋白质分离为二聚体和多聚体。在从紫外到真空紫外的区域中进行了圆二色性(CD)光谱。用两个分析程序分析CD光谱,以评估野生型和磷模拟的二聚体和多聚体的二级结构。结果与讨论:野生型二聚体中β链的比例非常低,尤其是在其C末端区域,包括五个磷酸化位点。磷酸模拟物的二级结构在二聚体形式中几乎没有变化。相反,野生型蛋白质的多聚化使β链含量增加,α螺旋含量减少。多聚体的结构变化略微依赖于磷酸模拟位点。这些结果表明,β链结构稳定了XRCC4的多聚化,并受活细胞C末端磷酸化的调节。结论:XRCC4中β链含量的增加对于通过C端磷酸化稳定多聚体形式至关重要,从而形成大型双链断裂修复机制。
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来源期刊
CiteScore
5.00
自引率
11.50%
发文量
142
审稿时长
3 months
期刊介绍: The International Journal of Radiation Biology publishes original papers, reviews, current topic articles, technical notes/reports, and meeting reports on the effects of ionizing, UV and visible radiation, accelerated particles, electromagnetic fields, ultrasound, heat and related modalities. The focus is on the biological effects of such radiations: from radiation chemistry to the spectrum of responses of living organisms and underlying mechanisms, including genetic abnormalities, repair phenomena, cell death, dose modifying agents and tissue responses. Application of basic studies to medical uses of radiation extends the coverage to practical problems such as physical and chemical adjuvants which improve the effectiveness of radiation in cancer therapy. Assessment of the hazards of low doses of radiation is also considered.
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