皮肤镜下皮肤癌数据集的领域转移:评估临床翻译的基本限制

IF 4.5 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS New biotechnology Pub Date : 2023-09-25 DOI:10.1016/j.nbt.2023.04.006
Katharina Fogelberg , Sireesha Chamarthi , Roman C. Maron , Julia Niebling , Titus J. Brinker
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引用次数: 0

摘要

卷积神经网络推广到以前看不见的领域的图像的能力有限,这是一个主要限制,特别是对于安全关键的临床任务,如皮肤镜癌症分类。为了将基于CNN的应用程序转化为临床,它们必须能够适应领域的变化。这种新的条件可以通过使用不同的图像采集系统或改变照明条件而出现。在皮肤镜检查中,转移也可能发生在患者年龄的变化或罕见病变部位(如手掌)的发生上。这些在大多数训练数据集中没有得到显著的体现,因此可能导致性能下降。为了验证分类模型在现实世界临床环境中的可推广性,访问模拟这种领域变化的数据至关重要。据我们所知,没有一个皮肤镜图像数据集可以正确地描述和量化这种域偏移。因此,我们根据ISIC档案中的元数据(如采集位置、病变定位、患者年龄)对公开可用的图像进行分组,以生成有意义的域。为了验证这些域实际上是不同的,我们使用了多种量化措施来估计域偏移的存在和强度。此外,我们还分析了在使用和不使用无监督领域自适应技术的情况下,这些领域的性能。我们观察到,在我们的大多数分组域中,域偏移实际上是存在的。基于我们的结果,我们相信这些数据集有助于测试皮肤镜癌症分类器的泛化能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Domain shifts in dermoscopic skin cancer datasets: Evaluation of essential limitations for clinical translation

The limited ability of Convolutional Neural Networks to generalize to images from previously unseen domains is a major limitation, in particular, for safety-critical clinical tasks such as dermoscopic skin cancer classification. In order to translate CNN-based applications into the clinic, it is essential that they are able to adapt to domain shifts. Such new conditions can arise through the use of different image acquisition systems or varying lighting conditions. In dermoscopy, shifts can also occur as a change in patient age or occurrence of rare lesion localizations (e.g. palms). These are not prominently represented in most training datasets and can therefore lead to a decrease in performance. In order to verify the generalizability of classification models in real world clinical settings it is crucial to have access to data which mimics such domain shifts. To our knowledge no dermoscopic image dataset exists where such domain shifts are properly described and quantified. We therefore grouped publicly available images from ISIC archive based on their metadata (e.g. acquisition location, lesion localization, patient age) to generate meaningful domains. To verify that these domains are in fact distinct, we used multiple quantification measures to estimate the presence and intensity of domain shifts. Additionally, we analyzed the performance on these domains with and without an unsupervised domain adaptation technique. We observed that in most of our grouped domains, domain shifts in fact exist. Based on our results, we believe these datasets to be helpful for testing the generalization capabilities of dermoscopic skin cancer classifiers.

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来源期刊
New biotechnology
New biotechnology 生物-生化研究方法
CiteScore
11.40
自引率
1.90%
发文量
77
审稿时长
1 months
期刊介绍: New Biotechnology is the official journal of the European Federation of Biotechnology (EFB) and is published bimonthly. It covers both the science of biotechnology and its surrounding political, business and financial milieu. The journal publishes peer-reviewed basic research papers, authoritative reviews, feature articles and opinions in all areas of biotechnology. It reflects the full diversity of current biotechnology science, particularly those advances in research and practice that open opportunities for exploitation of knowledge, commercially or otherwise, together with news, discussion and comment on broader issues of general interest and concern. The outlook is fully international. The scope of the journal includes the research, industrial and commercial aspects of biotechnology, in areas such as: Healthcare and Pharmaceuticals; Food and Agriculture; Biofuels; Genetic Engineering and Molecular Biology; Genomics and Synthetic Biology; Nanotechnology; Environment and Biodiversity; Biocatalysis; Bioremediation; Process engineering.
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