吸收问题:药物批准流行的口服生物利用度规则。

IF 2.8 4区 医学 Q3 CHEMISTRY, MEDICINAL Molecular Informatics Pub Date : 2023-11-01 Epub Date: 2023-08-31 DOI:10.1002/minf.202300115
Artur Caminero Gomes Soares, Gustavo Henrique Marques Sousa, Raisa Ludmila Calil, Gustavo Henrique Goulart Trossini
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引用次数: 0

摘要

本研究考察了早期开发中使用的两个流行的药物相似性概念,即利平斯基五规则(Ro5)和韦伯规则,如何可能影响1997年以来FDA批准的药物的药物特征。我们的研究结果表明,当适用所有标准时,相关化合物可能被排除在外,解决盲目使用这些规则的危害。在本分析所使用的所有口服药物中,约66%符合RO5, 85%符合Veber规则。随着时间的推移,分子量和计算的LogP显示出较低的一致性值,除了这两个最不受遵守的规则外,还挑战了它们的相关性。另一方面,氢键相关规则和可旋转键的数量是最受遵循的标准之一,并且随着时间的推移显示出异常的一致性。此外,我们的分析表明,拓扑极性表面积和氢键总数不能用作可互换的参数,这与最初的建议相反。本研究增强了对后利平斯基时期FDA批准的药物概况的理解。药物化学家可以利用这些启发式作为指导他们探索口服生物利用度化学空间的有限指南,但他们也必须驾驭轮子打破这些规则,在必要时探索不同的区域。
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Absorption matters: A closer look at popular oral bioavailability rules for drug approvals.
This study examines how two popular drug‐likeness concepts used in early development, Lipinski Rule of Five (Ro5) and Veber's Rules, possibly affected drug profiles of FDA approved drugs since 1997. Our findings suggest that when all criteria are applied, relevant compounds may be excluded, addressing the harmfulness of blindly employing these rules. Of all oral drugs in the period used for this analysis, around 66 % conform to the RO5 and 85 % to Veber's Rules. Molecular Weight and calculated LogP showed low consistent values over time, apart from being the two least followed rules, challenging their relevance. On the other hand, hydrogen bond related rules and the number of rotatable bonds are amongst the most followed criteria and show exceptional consistency over time. Furthermore, our analysis indicates that topological polar surface area and total count of hydrogen bonds cannot be used as interchangeable parameters, contrary to the original proposal. This research enhances the comprehension of drug profiles that were FDA approved in the post‐Lipinski period. Medicinal chemists could utilize these heuristics as a limited guide to direct their exploration of the oral bioavailability chemical space, but they must also steer the wheel to break these rules and explore different regions when necessary.
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来源期刊
Molecular Informatics
Molecular Informatics CHEMISTRY, MEDICINAL-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.30
自引率
2.80%
发文量
70
审稿时长
3 months
期刊介绍: Molecular Informatics is a peer-reviewed, international forum for publication of high-quality, interdisciplinary research on all molecular aspects of bio/cheminformatics and computer-assisted molecular design. Molecular Informatics succeeded QSAR & Combinatorial Science in 2010. Molecular Informatics presents methodological innovations that will lead to a deeper understanding of ligand-receptor interactions, macromolecular complexes, molecular networks, design concepts and processes that demonstrate how ideas and design concepts lead to molecules with a desired structure or function, preferably including experimental validation. The journal''s scope includes but is not limited to the fields of drug discovery and chemical biology, protein and nucleic acid engineering and design, the design of nanomolecular structures, strategies for modeling of macromolecular assemblies, molecular networks and systems, pharmaco- and chemogenomics, computer-assisted screening strategies, as well as novel technologies for the de novo design of biologically active molecules. As a unique feature Molecular Informatics publishes so-called "Methods Corner" review-type articles which feature important technological concepts and advances within the scope of the journal.
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