突变导致的蛋白质折叠率演变。

IF 4.9 Q1 BIOPHYSICS Biophysical reviews Pub Date : 2023-07-15 eCollection Date: 2023-08-01 DOI:10.1007/s12551-023-01088-z
Jorge A Vila
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引用次数: 0

摘要

尽管最先进的蛋白质折叠预测方法取得了巨大成功,但许多关键问题仍未得到解答,其中包括为什么蛋白质能在生物学上合理的时间内达到其原生状态。对这一简单问题的满意答案可以揭示蛋白质的最慢折叠率,以及氨基酸置换和/或翻译后修饰等突变可能对其产生的影响。初步结果表明:(i) 无论蛋白质的序列或长度如何,安芬森教条都能确保蛋白质在合理的时间范围内达到其原生状态;(ii) 在不考虑外显效应或起始序列与目标序列之间的突变轨迹的情况下,确定蛋白质折叠率的进化是可行的。这些结果对进化生物学有直接影响,因为它们为更好地理解突变--进化的关键因素和影响因素--影响蛋白质可进化性的原因和程度奠定了基础。此外,它们还可能促使我们在解决关键的结构生物学问题(如序列如何编码其折叠)方面取得重大进展。
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Protein folding rate evolution upon mutations.

Despite the spectacular success of cutting-edge protein fold prediction methods, many critical questions remain unanswered, including why proteins can reach their native state in a biologically reasonable time. A satisfactory answer to this simple question could shed light on the slowest folding rate of proteins as well as how mutations-amino-acid substitutions and/or post-translational modifications-might affect it. Preliminary results indicate that (i) Anfinsen's dogma validity ensures that proteins reach their native state on a reasonable timescale regardless of their sequence or length, and (ii) it is feasible to determine the evolution of protein folding rates without accounting for epistasis effects or the mutational trajectories between the starting and target sequences. These results have direct implications for evolutionary biology because they lay the groundwork for a better understanding of why, and to what extent, mutations-a crucial element of evolution and a factor influencing it-affect protein evolvability. Furthermore, they may spur significant progress in our efforts to solve crucial structural biology problems, such as how a sequence encodes its folding.

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来源期刊
Biophysical reviews
Biophysical reviews Biochemistry, Genetics and Molecular Biology-Biophysics
CiteScore
8.90
自引率
0.00%
发文量
93
期刊介绍: Biophysical Reviews aims to publish critical and timely reviews from key figures in the field of biophysics. The bulk of the reviews that are currently published are from invited authors, but the journal is also open for non-solicited reviews. Interested authors are encouraged to discuss the possibility of contributing a review with the Editor-in-Chief prior to submission. Through publishing reviews on biophysics, the editors of the journal hope to illustrate the great power and potential of physical techniques in the biological sciences, they aim to stimulate the discussion and promote further research and would like to educate and enthuse basic researcher scientists and students of biophysics. Biophysical Reviews covers the entire field of biophysics, generally defined as the science of describing and defining biological phenomenon using the concepts and the techniques of physics. This includes but is not limited by such areas as: - Bioinformatics - Biophysical methods and instrumentation - Medical biophysics - Biosystems - Cell biophysics and organization - Macromolecules: dynamics, structures and interactions - Single molecule biophysics - Membrane biophysics, channels and transportation
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Biophysical Reviews' "Meet the Editors Series"-a profile of Anthony Watts. Biophysical Reviews: the official journal of the International Union for Pure and Applied Biophysics. The Albany Conversations Are Now the Next Generation Conversations: Albany @ Ruston. Special issue: Multiscale simulations of DNA from electrons to nucleosomes. Structure-based prediction of protein-nucleic acid binding using graph neural networks.
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