P Zhao, P W Crous, L W Hou, W J Duan, L Cai, Z Y Ma, F Liu
{"title":"中国检疫关注的真菌 I. Dothideomycetes:Dothideomycetes.","authors":"P Zhao, P W Crous, L W Hou, W J Duan, L Cai, Z Y Ma, F Liu","doi":"10.3767/persoonia.2021.47.02","DOIUrl":null,"url":null,"abstract":"<p><p>The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in <i>Dothideomycetes</i>, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely <i>Cophinforma tumefaciens</i> comb. nov. (syn. <i>Sphaeropsis tumefaciens</i>)<i>.</i> On the basis of phylogenetic analyses and morphological comparisons, a new genus <i>Xenosphaeropsis</i> is introduced to accommodate the monotypic species <i>Xenosphaeropsis pyriputrescens</i> comb. nov. (syn. <i>Sphaeropsis pyriputrescens</i>), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (<i>Ascochyta petroselini</i>, <i>Mycosphaerella ligulicola</i>, <i>Physalospora laricina</i>, <i>Sphaeria lingam</i>), three epitypes (<i>Ascochyta petroselini</i>, <i>Phoma lycopersici</i>, <i>Sphaeria lingam</i>), and two neotypes (<i>Ascochyta pinodella</i>, <i>Deuterophoma tracheiphila</i>) are designated to stabilise the use of these names. A further four reference strains are introduced for <i>Cophinforma tumefaciens</i>, <i>Helminthosporium solani</i>, <i>Mycocentrospora acerina</i>, and <i>Septoria linicola</i>. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including <i>Alternaria triticina</i>, <i>Boeremia foveata</i>, <i>B. lycopersici</i>, <i>Cladosporium cucumerinum</i>, <i>Didymella glomerata</i>, <i>Didymella pinodella</i>, <i>Diplodia mutila</i>, <i>Helminthosporium solani</i>, <i>Mycocentrospora acerina</i>, <i>Neofusicoccum laricinum</i>, <i>Parastagonospora pseudonodorum</i>, <i>Plenodomus libanotidis</i>, <i>Plenodomus lingam</i>, <i>Plenodomus tracheiphilus</i>, <i>Septoria petroselini</i>, <i>Stagonosporopsis chrysanthemi</i>, and <i>Xenosphaeropsis pyriputrescens</i>. <b>Citation</b>: Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia 47: 45-105. https://doi.org/10.3767/persoonia.2021.47.02.</p>","PeriodicalId":20014,"journal":{"name":"Persoonia","volume":null,"pages":null},"PeriodicalIF":9.5000,"publicationDate":"2021-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10486631/pdf/","citationCount":"0","resultStr":"{\"title\":\"Fungi of quarantine concern for China I: <i>Dothideomycetes</i>.\",\"authors\":\"P Zhao, P W Crous, L W Hou, W J Duan, L Cai, Z Y Ma, F Liu\",\"doi\":\"10.3767/persoonia.2021.47.02\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in <i>Dothideomycetes</i>, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely <i>Cophinforma tumefaciens</i> comb. nov. (syn. <i>Sphaeropsis tumefaciens</i>)<i>.</i> On the basis of phylogenetic analyses and morphological comparisons, a new genus <i>Xenosphaeropsis</i> is introduced to accommodate the monotypic species <i>Xenosphaeropsis pyriputrescens</i> comb. nov. (syn. <i>Sphaeropsis pyriputrescens</i>), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (<i>Ascochyta petroselini</i>, <i>Mycosphaerella ligulicola</i>, <i>Physalospora laricina</i>, <i>Sphaeria lingam</i>), three epitypes (<i>Ascochyta petroselini</i>, <i>Phoma lycopersici</i>, <i>Sphaeria lingam</i>), and two neotypes (<i>Ascochyta pinodella</i>, <i>Deuterophoma tracheiphila</i>) are designated to stabilise the use of these names. A further four reference strains are introduced for <i>Cophinforma tumefaciens</i>, <i>Helminthosporium solani</i>, <i>Mycocentrospora acerina</i>, and <i>Septoria linicola</i>. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including <i>Alternaria triticina</i>, <i>Boeremia foveata</i>, <i>B. lycopersici</i>, <i>Cladosporium cucumerinum</i>, <i>Didymella glomerata</i>, <i>Didymella pinodella</i>, <i>Diplodia mutila</i>, <i>Helminthosporium solani</i>, <i>Mycocentrospora acerina</i>, <i>Neofusicoccum laricinum</i>, <i>Parastagonospora pseudonodorum</i>, <i>Plenodomus libanotidis</i>, <i>Plenodomus lingam</i>, <i>Plenodomus tracheiphilus</i>, <i>Septoria petroselini</i>, <i>Stagonosporopsis chrysanthemi</i>, and <i>Xenosphaeropsis pyriputrescens</i>. <b>Citation</b>: Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. 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Fungi of quarantine concern for China I: Dothideomycetes.
The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in Dothideomycetes, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely Cophinforma tumefaciens comb. nov. (syn. Sphaeropsis tumefaciens). On the basis of phylogenetic analyses and morphological comparisons, a new genus Xenosphaeropsis is introduced to accommodate the monotypic species Xenosphaeropsis pyriputrescens comb. nov. (syn. Sphaeropsis pyriputrescens), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (Ascochyta petroselini, Mycosphaerella ligulicola, Physalospora laricina, Sphaeria lingam), three epitypes (Ascochyta petroselini, Phoma lycopersici, Sphaeria lingam), and two neotypes (Ascochyta pinodella, Deuterophoma tracheiphila) are designated to stabilise the use of these names. A further four reference strains are introduced for Cophinforma tumefaciens, Helminthosporium solani, Mycocentrospora acerina, and Septoria linicola. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including Alternaria triticina, Boeremia foveata, B. lycopersici, Cladosporium cucumerinum, Didymella glomerata, Didymella pinodella, Diplodia mutila, Helminthosporium solani, Mycocentrospora acerina, Neofusicoccum laricinum, Parastagonospora pseudonodorum, Plenodomus libanotidis, Plenodomus lingam, Plenodomus tracheiphilus, Septoria petroselini, Stagonosporopsis chrysanthemi, and Xenosphaeropsis pyriputrescens. Citation: Zhao P, Crous PW, Hou LW, et al. 2021. Fungi of quarantine concern for China I: Dothideomycetes. Persoonia 47: 45-105. https://doi.org/10.3767/persoonia.2021.47.02.
期刊介绍:
Persoonia aspires to publish papers focusing on the molecular systematics and evolution of fungi. Additionally, it seeks to advance fungal taxonomy by employing a polythetic approach to elucidate the genuine phylogeny and relationships within the kingdom Fungi. The journal is dedicated to disseminating high-quality papers that unravel both known and novel fungal taxa at the DNA level. Moreover, it endeavors to provide fresh insights into evolutionary processes and relationships. The scope of papers considered encompasses research articles, along with topical and book reviews.