克服肺腺癌亚型中观察者之间的差异:一种为下游应用建立基础事实的聚类方法。

IF 3.7 3区 医学 Q2 MEDICAL LABORATORY TECHNOLOGY Archives of pathology & laboratory medicine Pub Date : 2023-08-01 DOI:10.5858/arpa.2022-0051-OA
Kris Lami, Andrey Bychkov, Keitaro Matsumoto, Richard Attanoos, Sabina Berezowska, Luka Brcic, Alberto Cavazza, John C English, Alexandre Todorovic Fabro, Kaori Ishida, Yukio Kashima, Brandon T Larsen, Alberto M Marchevsky, Takuro Miyazaki, Shimpei Morimoto, Anja C Roden, Frank Schneider, Mano Soshi, Maxwell L Smith, Kazuhiro Tabata, Angela M Takano, Kei Tanaka, Tomonori Tanaka, Tomoshi Tsuchiya, Takeshi Nagayasu, Junya Fukuoka
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引用次数: 4

摘要

上下文。-:准确识别不同的肺腺癌组织学亚型对确定预后很重要,但由于诊断特征重叠,导致观察者之间存在相当大的差异,因此可能具有挑战性。-:提供病理学家对肺腺癌亚型诊断一致性的概述,并为下游计算应用使用聚类方法创建一个基本事实。-:由17名国际肺病理学专家和1名实习病理学家对3组不同评价水平的肺腺癌组织学图像(小斑块、组织学相对均匀的区域和整张切片图像)进行评审。每张图像被分类为一种或几种肺腺癌亚型。-:在第一组的4702个斑块中,1742个(37%)在所有病理学家中获得了总体共识。所有亚型的总体Fleiss κ评分一致性为0.58。采用聚类分析方法,将病理患者分层分为2个聚类,聚类1的κ评分为0.588,聚类2的κ评分为0.563。第二组和第三组也得到了类似的结果,具有中等程度的一致性。从前2组获得18名病理学家一致的斑块中提取斑块,形成共识斑块,并将其作为肺腺癌亚型的基本事实。-:我们的观察结果突出了专家在评估肺腺癌亚型时的差异。然而,随后的共识补丁的数量可以从每个集群中检索,这可以用作下游计算病理学应用的基础真理,与观察者之间的可变性的影响最小。
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Overcoming the Interobserver Variability in Lung Adenocarcinoma Subtyping: A Clustering Approach to Establish a Ground Truth for Downstream Applications.

Context.—: The accurate identification of different lung adenocarcinoma histologic subtypes is important for determining prognosis but can be challenging because of overlaps in the diagnostic features, leading to considerable interobserver variability.

Objective.—: To provide an overview of the diagnostic agreement for lung adenocarcinoma subtypes among pathologists and to create a ground truth using the clustering approach for downstream computational applications.

Design.—: Three sets of lung adenocarcinoma histologic images with different evaluation levels (small patches, areas with relatively uniform histology, and whole slide images) were reviewed by 17 international expert lung pathologists and 1 pathologist in training. Each image was classified into one or several lung adenocarcinoma subtypes.

Results.—: Among the 4702 patches of the first set, 1742 (37%) had an overall consensus among all pathologists. The overall Fleiss κ score for the agreement of all subtypes was 0.58. Using cluster analysis, pathologists were hierarchically grouped into 2 clusters, with κ scores of 0.588 and 0.563 in clusters 1 and 2, respectively. Similar results were obtained for the second and third sets, with fair-to-moderate agreements. Patches from the first 2 sets that obtained the consensus of the 18 pathologists were retrieved to form consensus patches and were regarded as the ground truth of lung adenocarcinoma subtypes.

Conclusions.—: Our observations highlight discrepancies among experts when assessing lung adenocarcinoma subtypes. However, a subsequent number of consensus patches could be retrieved from each cluster, which can be used as ground truth for the downstream computational pathology applications, with minimal influence from interobserver variability.

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来源期刊
CiteScore
9.20
自引率
2.20%
发文量
369
审稿时长
3-8 weeks
期刊介绍: Welcome to the website of the Archives of Pathology & Laboratory Medicine (APLM). This monthly, peer-reviewed journal of the College of American Pathologists offers global reach and highest measured readership among pathology journals. Published since 1926, ARCHIVES was voted in 2009 the only pathology journal among the top 100 most influential journals of the past 100 years by the BioMedical and Life Sciences Division of the Special Libraries Association. Online access to the full-text and PDF files of APLM articles is free.
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