S Tripathi, P Mattioli, C Liguori, A Chiaravalloti, D Arnaldi, L Giancardo
{"title":"用 FDG PET 预测α-突触核蛋白病的自监督学习方法--脑半球相似性。","authors":"S Tripathi, P Mattioli, C Liguori, A Chiaravalloti, D Arnaldi, L Giancardo","doi":"10.1109/isbi53787.2023.10230560","DOIUrl":null,"url":null,"abstract":"<p><p>Idiopathic Rem sleep Behavior Disorder (iRBD) is a significant biomarker for the development of alpha-synucleinopathies, such as Parkinson's disease (PD) or Dementia with Lewy bodies (DLB). Methods to identify patterns in iRBD patients can help in the prediction of the future conversion to these diseases during the long prodromal phase when symptoms are non-specific. These methods are essential for disease management and clinical trial recruitment. Brain PET scans with 18F-FDG PET radiotracers have recently shown promise, however, the scarcity of longitudinal data and PD/DLB conversion information makes the use of representation learning approaches such as deep convolutional networks not feasible if trained in a supervised manner. In this work, we propose a self-supervised learning strategy to learn features by comparing the brain hemispheres of iRBD non-convertor subjects, which allows for pre-training a convolutional network on a small data regimen. We introduce a loss function called hemisphere dissimilarity loss (HDL), which extends the Barlow Twins loss, that promotes the creation of invariant and non-redundant features for brain hemispheres of the same subject, and the opposite for hemispheres of different subjects. This loss enables the pre-training of a network without any information about the disease, which is then used to generate full brain feature vectors that are fine-tuned to two downstream tasks: follow-up conversion, and the type of conversion (PD or DLB) using baseline 18F-FDG PET. In our results, we find that the HDL outperforms the variational autoencoder with different forms of inputs.</p>","PeriodicalId":74566,"journal":{"name":"Proceedings. IEEE International Symposium on Biomedical Imaging","volume":"2023 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10496490/pdf/","citationCount":"0","resultStr":"{\"title\":\"Brain Hemisphere Dissimilarity, a Self-Supervised Learning Approach for alpha-synucleinopathies prediction with FDG PET.\",\"authors\":\"S Tripathi, P Mattioli, C Liguori, A Chiaravalloti, D Arnaldi, L Giancardo\",\"doi\":\"10.1109/isbi53787.2023.10230560\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Idiopathic Rem sleep Behavior Disorder (iRBD) is a significant biomarker for the development of alpha-synucleinopathies, such as Parkinson's disease (PD) or Dementia with Lewy bodies (DLB). Methods to identify patterns in iRBD patients can help in the prediction of the future conversion to these diseases during the long prodromal phase when symptoms are non-specific. These methods are essential for disease management and clinical trial recruitment. Brain PET scans with 18F-FDG PET radiotracers have recently shown promise, however, the scarcity of longitudinal data and PD/DLB conversion information makes the use of representation learning approaches such as deep convolutional networks not feasible if trained in a supervised manner. In this work, we propose a self-supervised learning strategy to learn features by comparing the brain hemispheres of iRBD non-convertor subjects, which allows for pre-training a convolutional network on a small data regimen. We introduce a loss function called hemisphere dissimilarity loss (HDL), which extends the Barlow Twins loss, that promotes the creation of invariant and non-redundant features for brain hemispheres of the same subject, and the opposite for hemispheres of different subjects. This loss enables the pre-training of a network without any information about the disease, which is then used to generate full brain feature vectors that are fine-tuned to two downstream tasks: follow-up conversion, and the type of conversion (PD or DLB) using baseline 18F-FDG PET. In our results, we find that the HDL outperforms the variational autoencoder with different forms of inputs.</p>\",\"PeriodicalId\":74566,\"journal\":{\"name\":\"Proceedings. IEEE International Symposium on Biomedical Imaging\",\"volume\":\"2023 \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10496490/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proceedings. IEEE International Symposium on Biomedical Imaging\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/isbi53787.2023.10230560\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/9/1 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings. IEEE International Symposium on Biomedical Imaging","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/isbi53787.2023.10230560","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/9/1 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
特发性睡眠行为障碍(iRBD)是帕金森病(PD)或路易体痴呆(DLB)等α-突触核蛋白病发展的重要生物标志物。在症状无特异性的漫长前驱期,识别 iRBD 患者模式的方法有助于预测这些疾病的未来转归。这些方法对于疾病管理和临床试验招募至关重要。最近,使用 18F-FDG PET 放射性同位素进行的脑 PET 扫描显示了前景,然而,由于纵向数据和 PD/DLB 转换信息的稀缺,使用深度卷积网络等表征学习方法进行监督训练并不可行。在这项工作中,我们提出了一种自监督学习策略,通过比较 iRBD 非转换者受试者的大脑半球来学习特征,这样就可以在小数据方案上对卷积网络进行预训练。我们引入了一种称为半球不相似性损失(HDL)的损失函数,它扩展了巴洛双胞胎损失(Barlow Twins loss),可促进为同一受试者的大脑半球创建不变且非冗余的特征,而为不同受试者的大脑半球创建相反的特征。通过这种损失,可以在没有任何疾病信息的情况下对网络进行预训练,然后利用预训练生成完整的大脑特征向量,并根据两个下游任务对其进行微调:随访转换和利用基线 18F-FDG PET 确定转换类型(PD 或 DLB)。在我们的研究结果中,我们发现 HDL 在不同形式的输入下都优于变异自动编码器。
Brain Hemisphere Dissimilarity, a Self-Supervised Learning Approach for alpha-synucleinopathies prediction with FDG PET.
Idiopathic Rem sleep Behavior Disorder (iRBD) is a significant biomarker for the development of alpha-synucleinopathies, such as Parkinson's disease (PD) or Dementia with Lewy bodies (DLB). Methods to identify patterns in iRBD patients can help in the prediction of the future conversion to these diseases during the long prodromal phase when symptoms are non-specific. These methods are essential for disease management and clinical trial recruitment. Brain PET scans with 18F-FDG PET radiotracers have recently shown promise, however, the scarcity of longitudinal data and PD/DLB conversion information makes the use of representation learning approaches such as deep convolutional networks not feasible if trained in a supervised manner. In this work, we propose a self-supervised learning strategy to learn features by comparing the brain hemispheres of iRBD non-convertor subjects, which allows for pre-training a convolutional network on a small data regimen. We introduce a loss function called hemisphere dissimilarity loss (HDL), which extends the Barlow Twins loss, that promotes the creation of invariant and non-redundant features for brain hemispheres of the same subject, and the opposite for hemispheres of different subjects. This loss enables the pre-training of a network without any information about the disease, which is then used to generate full brain feature vectors that are fine-tuned to two downstream tasks: follow-up conversion, and the type of conversion (PD or DLB) using baseline 18F-FDG PET. In our results, we find that the HDL outperforms the variational autoencoder with different forms of inputs.