坏死相关的预后特征和预测肺癌患者总生存的Nomogram模型。

IF 1.4 4区 生物学 Q4 GENETICS & HEREDITY Genetics research Pub Date : 2022-01-01 DOI:10.1155/2022/4908608
Yunpeng Xuan, Xiangfeng Jin, Mingzhao Wang, Zizong Wang
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引用次数: 0

摘要

背景:坏死性上睑塌陷是一种程序性细胞死亡方式,在肿瘤发生和转移过程中起着重要作用。本研究的目的是建立一个基于坏死相关基因和nomogram预后模型来预测肺癌患者的总生存期。方法:检测肺癌患者与正常患者肺组织中坏死相关基因(nrd)的差异表达。采用单变量和LASSO回归分析建立风险评分(RS)模型,并在TCGA和GSE37745中进行验证。分析RS模型与肿瘤微环境、突变状态、药物敏感性的相关性。通过结合临床因素,开发了nomogram预测个体1、3、5年生存率。采用GSEA对不同危险人群所涉及的生物学功能进行分析。结果:构建了包含FLNC、PLK1、ID1、MYO1C、SERTAD1、LEF1 6个NRDs的RS模型,将患者分为低危(LR)组和高危(HR)组。HR组患者的生存时间较LR组短;该模型具有较好的预后效果。基于坏死下垂评分、T分期和分期的Nomogram (Nomogram)已被证实可以预测患者的生存。HR组大鼠静止NK细胞和M0巨噬细胞数量明显增加。此外,HR组的肿瘤突变负担和药物敏感性均较高。HR组患者参与p53信号通路和细胞周期。结论:本研究构建了一个强大的6 - nrds特征,并建立了预测肺癌生存的预后nomogram。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Necroptosis-Related Prognostic Signature and Nomogram Model for Predicting the Overall Survival of Patients with Lung Cancer.

Background: Necroptosis is a type of programmed cell death mode and it serves an important role in the tumorigenesis and tumor metastasis. The purpose of this study is to develop a prognostic model based on necroptosis-related genes and nomogram for predicting the overall survival of patients with lung cancer.

Method: Differentially expressed necroptosis-related genes (NRDs) between lung cancer and normal samples were identified. Univariate and LASSO regression analyses were performed to establish a risk score (RS) model, followed by validation within TCGA and GSE37745. The correlation between RS model and tumor microenvironment, mutation status, or drug susceptibility was analyzed. By combining clinical factors, nomogram was developed to predict 1-, 3-, and 5-year survival probability of an individual. The biological function involved by different risk groups was conducted by GSEA.

Results: A RS model containing six NRDs (FLNC, PLK1, ID1, MYO1C, SERTAD1, and LEF1) was constructed, and patients were divieded into low-risk (LR) and high-risk (HR) groups. Patients in HR group were associated with shorter survival time than those in the LR group; this model had better prognostic performance. Nomogram based on necroptosis score, T stage, and stage had been confirmed to predict survival of patients. The number of resting NK cells and M0 macrophages was higher in HR group. In addition, higher tumor mutational burden and drug sensitivity were observed in the HR group. Patients in HR group were involved in p53 signaling pathway and cell cycle.

Conclusion: This study constructed a robust six-NRDs signature and established a prognostic nomogram for survival prediction of lung cancer.

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来源期刊
Genetics research
Genetics research 生物-遗传学
自引率
6.70%
发文量
74
审稿时长
>12 weeks
期刊介绍: Genetics Research is a key forum for original research on all aspects of human and animal genetics, reporting key findings on genomes, genes, mutations and molecular interactions, extending out to developmental, evolutionary, and population genetics as well as ethical, legal and social aspects. Our aim is to lead to a better understanding of genetic processes in health and disease. The journal focuses on the use of new technologies, such as next generation sequencing together with bioinformatics analysis, to produce increasingly detailed views of how genes function in tissues and how these genes perform, individually or collectively, in normal development and disease aetiology. The journal publishes original work, review articles, short papers, computational studies, and novel methods and techniques in research covering humans and well-established genetic organisms. Key subject areas include medical genetics, genomics, human evolutionary and population genetics, bioinformatics, genetics of complex traits, molecular and developmental genetics, Evo-Devo, quantitative and statistical genetics, behavioural genetics and environmental genetics. The breadth and quality of research make the journal an invaluable resource for medical geneticists, molecular biologists, bioinformaticians and researchers involved in genetic basis of diseases, evolutionary and developmental studies.
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